TreeData is a lightweight wrapper around AnnData which adds two additional attributes, obst and vart, to store nx.DiGraph trees for observations and variables. TreeData has the same interface as AnnData and is fully compatible with scverse packages like scanpy.
To learn more about TreeData, please refer to the documentation or checkout the getting started guide.
You need to have Python 3.10 or newer installed on your system. If you don't have Python installed, we recommend installing Mambaforge.
There are several alternative options to install treedata:
treedata from PyPI:pip install treedata
pip install git+https://github.com/YosefLab/treedata.git@main
See the changelog.
For questions and bug reports please use the issue tracker.
t.b.a
FAQs
anndata with trees
We found that treedata demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
Did you know?
Socket for GitHub automatically highlights issues in each pull request and monitors the health of all your open source dependencies. Discover the contents of your packages and block harmful activity before you install or update your dependencies.
Security News
In this segment of the Risky Business podcast, Feross Aboukhadijeh and Patrick Gray discuss the challenges of tracking malware discovered in open source softare.
Research
Security News
A threat actor's playbook for exploiting the npm ecosystem was exposed on the dark web, detailing how to build a blockchain-powered botnet.
Security News
NVD’s backlog surpasses 20,000 CVEs as analysis slows and NIST announces new system updates to address ongoing delays.