A framework for developing bioinformatic workflows in Python.
from virtool_workflow import step
@step
def step_function():
...
@step
def step_function_2():
...
We require specific commit formatting. Any commit that does not follow the guidelines will be squashed at our discretion.
Read our commit and release documentation for more information.
Run tests with:
# Bring up Redis and the test container.
docker compose up -d
# Run tests in the test container.
docker compose exec test poetry run pytest
Run specific tests like:
docker compose exec test poetry run pytest tests/test_status.py
FAQs
A framework for developing bioinformatics workflows for Virtool.
We found that virtool-workflow demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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