@geneontology/dbxrefs - npm Package Compare versions

Comparing version 1.0.9 to 1.0.10

go-dbxrefs.js

 const axios = require('axios');
 const yaml = require('js-yaml');
 
-let URL = "https://raw.githubusercontent.com/geneontology/go-site/09eb2dbdc4c71565528a2802d0591ba6b8f45fcc/metadata/db-xrefs.yaml"
+// let URL = "https://raw.githubusercontent.com/geneontology/go-site/09eb2dbdc4c71565528a2802d0591ba6b8f45fcc/metadata/db-xrefs.yaml"
+let URL = "http://current.geneontology.org/metadata/db-xrefs.yaml";
 
@@ -19,9 +20,5 @@ let dbxrefs;
 function getURL(database, entityType, id) {
-    if(database == "FlyBase") database = "FB";      // This is required as for instance the GO API Autocomplete / search return ids like FlyBase:FBgn0032821
+    let db = dbxrefs.filter(elt => (elt.database.toLowerCase() == database.toLowerCase()) || (elt.synonyms && elt.synonyms.includes(database)) );
+    if(!db || db.length == 0) { console.log("database " , database , " not found"); return undefined; }
 
-    if(database == "WormBase") database = "WB";      // This is required as for instance the GO API Autocomplete / search return ids like WormBase:WBGene00000409
-    
-    let db = dbxrefs.filter(elt => elt.database.toLowerCase() == database.toLowerCase());
-    if(!db) { console.log("database " , database , " not found"); return undefined; }
-
     let entity;
@@ -35,4 +32,5 @@ if(entityType) {
 
-    let url = entity[0].url_syntax.replace("[example_id]", "");
-    return url + id;
+    entity = entity[0];
+    let url = entity.url_syntax.replace("[example_id]", id);
+    return url;
 }
@@ -59,2 +57,3 @@
         dbError = false;
+        return dbxrefs;
     })
@@ -65,4 +64,4 @@ .catch(error => {
         dbError = true;
+        return undefined
     })
-    return dbxrefs;
 }
@@ -73,2 +72,13 @@
     init, getURL, isReady, hasError, getDBXrefs
-}
+}
+
+
+// For testing
+// init()
+// .then(() => {
+//     // console.log(getURL("GO_REF", undefined, "0000037"));
+//     // console.log(getURL("PAINT_REF", undefined, "24356"));
+//     // console.log(getURL("FlyBase", undefined, "FBgn0032821"))
+//     // console.log(getURL("WormBase", undefined, "WBGene00000409"));
+//     console.log(getURL("NCBITaxon", undefined, "6239"));
+// })

package.json

 {
   "name": "@geneontology/dbxrefs",
-  "version": "1.0.9",
+  "version": "1.0.10",
   "description": "basic library to resolve link outs from database name and ID",
@@ -5,0 +5,0 @@ "main": "go-dbxrefs.js",

No alert changes

Improved metrics

Total package byte prevSize

2572

increased by10.39%

Lines of code

62

increased by19.23%

No dependency changes