@geneontology/ribbon

ribbon

Short form matrix view of all GO annotations for a given gene

Acknowledgments

• Thanks to Sibyl Gao (@sibyl229) for knowing what to do and how to do it for AGR usage, Josh Goodman for making his code available as a start point, Seth Carbon (@kltm) for bearing with my naive questions, and Chris Mungall (@cmungall) for all the usual fantastic things he does

Installation

• Make sure node.js is installed - see https://nodejs.org/en/download/

• Once node.js is on your machine then dependent packages need to be brought in. Running npm install in the components's root directory will install everything you need for development.

• Note that you may need to run 'npm install' as sudo.

• To install locally, you need to run:

• npm run build

• npm pack

• point to the .tgz file locally (had many issues with npm link)

Demo Ribbon Server

• npm start will run a local server with the ribbon's demo app at http://localhost:3000 with hot module reloading.
• To actually see a populated 'ribbon' you will need to provide the resource name and the resource's gene identifier in the URL. That is: http://localhost:3000/?subject=MGI:MGI:97490 or http://localhost:3000/?subject=ZFIN:ZDB-GENE-990415-173

Examples

• fly

• zebrafish

• mouse

Build the library

npm run build will prepare the assets of the library for publishing to NPM.