@jbrowse/plugin-alignments

The README file is missing

Changelog

2.4.1 (2023-03-14)

<details><summary>Packages in this release</summary> <p>

| Package | Download | | --------------------------------------- | ----------------------------------------------------------------- | | @jbrowse/core | https://www.npmjs.com/package/@jbrowse/core | | @jbrowse/text-indexing | | | @jbrowse/plugin-alignments | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | @jbrowse/plugin-authentication | https://www.npmjs.com/package/@jbrowse/plugin-authentication | | @jbrowse/plugin-bed | https://www.npmjs.com/package/@jbrowse/plugin-bed | | @jbrowse/plugin-breakpoint-split-view | | | @jbrowse/plugin-circular-view | https://www.npmjs.com/package/@jbrowse/plugin-circular-view | | @jbrowse/plugin-comparative-adapters | | | @jbrowse/plugin-config | https://www.npmjs.com/package/@jbrowse/plugin-config | | @jbrowse/plugin-data-management | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | @jbrowse/plugin-dotplot-view | | | @jbrowse/plugin-gff3 | https://www.npmjs.com/package/@jbrowse/plugin-gff3 | | @jbrowse/plugin-grid-bookmark | https://www.npmjs.com/package/@jbrowse/plugin-grid-bookmark | | @jbrowse/plugin-gtf | https://www.npmjs.com/package/@jbrowse/plugin-gtf | | @jbrowse/plugin-hic | | | @jbrowse/plugin-jobs-management | | | @jbrowse/plugin-legacy-jbrowse | https://www.npmjs.com/package/@jbrowse/plugin-legacy-jbrowse | | @jbrowse/plugin-linear-comparative-view | | | @jbrowse/plugin-linear-genome-view | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | @jbrowse/plugin-lollipop | | | @jbrowse/plugin-menus | | | @jbrowse/plugin-sequence | https://www.npmjs.com/package/@jbrowse/plugin-sequence | | @jbrowse/plugin-spreadsheet-view | | | @jbrowse/plugin-sv-inspector | | | @jbrowse/plugin-svg | https://www.npmjs.com/package/@jbrowse/plugin-svg | | @jbrowse/plugin-text-indexing | | | @jbrowse/plugin-trix | https://www.npmjs.com/package/@jbrowse/plugin-trix | | @jbrowse/plugin-variants | https://www.npmjs.com/package/@jbrowse/plugin-variants | | @jbrowse/plugin-wiggle | https://www.npmjs.com/package/@jbrowse/plugin-wiggle | | @jbrowse/cli | https://www.npmjs.com/package/@jbrowse/cli | | @jbrowse/desktop | | | @jbrowse/img | https://www.npmjs.com/package/@jbrowse/img | | @jbrowse/react-circular-genome-view | https://www.npmjs.com/package/@jbrowse/react-circular-genome-view | | @jbrowse/react-linear-genome-view | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | @jbrowse/web | |

</p> </details>

:rocket: Enhancement

• core
  • #3534 Improve visibility of SNPs on alignments track (@cmdcolin)
  • #3561 Add scroll zoom, d-pad, and more click+drag options to dotplot (@cmdcolin)
• Other
  • #3574 Add ability to load all built-in synteny data sources from @jbrowse/cli (@cmdcolin)
  • #3564 Use double-click to zoom in on particular offset in LGV, and make ctrl+scroll also zoom in on particular offset (@cmdcolin)

:bug: Bug Fix

• #3578 Fix selected synteny feature getting unselected after scroll (@cmdcolin)
• #3566 Fix use of "show all regions with data" feature in SV inspector with TRA entries (with CHR2 from INFO) (@cmdcolin)
• #3558 Fix visual effect from using the overview scalebar click and dragging backwards (@cmdcolin)
• #3556 Fix infinite loading state when no synteny features are visible in synteny view (@cmdcolin)
• #3551 Fix bad layout on tabix tracks that have Unicode characters (@cmdcolin)
• #3548 Fix upper case querying of jbrowse 1 text search store (@cmdcolin)
• #3545 Fix issue where clearing search box on LGV import form turns search box into loading bar (@cmdcolin)

:memo: Documentation

• #3571 Fixing link to PAG 2023 tutorial (@scottcain)

:house: Internal

• Other
  • #3567 Update github actions workflows to newer versions (@cmdcolin)
• __mocks__, core, text-indexing
  • #3557 Add additional lint rules from typescript-eslint and eslint-plugin-unicorn (@cmdcolin)

Committers: 2

• Colin Diesh (@cmdcolin)
• Scott Cain (@scottcain)