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@jbrowse/plugin-alignments
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2.7.0 (2023-10-04)
:rocket: Enhancement
- Other
- #3956 Make faceted track selector facet filters responsive to adjacent filter selections (@cmdcolin)
- #3953 Report JSON parse error when failing to load JSON file on desktop (@cmdcolin)
- #3951 Add jobs widget to jbrowse-web (@carolinebridge-oicr)
- #3900 Make bookmarks persistent across sessions with local storage (@carolinebridge-oicr)
- #3896 Upgrade oclif to v3 to avoid deprecation warnings (@garrettjstevens)
- #3907 Change the config.json missing screen to an "It worked!" message (@cmdcolin)
- #3901 Use shortened VCF feature description for some types of insertions and deletions (@cmdcolin)
- #3840 Adds custom filtering option to alignments tracks (@carolinebridge-oicr)
- #3832 Adds keyboard shortcuts for panning and zooming on a focused view (@carolinebridge-oicr)
coreapp-core,core,embedded-coreapp-coreapp-core,core,embedded-core,product-core,text-indexing,web-coreapp-core,core,web-core- #3831 Adds session model reference to view in focus (@carolinebridge-oicr)
:bug: Bug Fix
app-core,core- Other
- #3946 Fix setting multiple hierarchical defaultCollapsed config options at initialization (@cmdcolin)
- #3937 Fix dev mode error from LGV overview scalebar (@cmdcolin)
- #3925 Reduce amount of canvas commands issued to the dotplot renderer (@cmdcolin)
- #3924 Fix incorrect tick mark label on dotplot axes happening in some cases (@cmdcolin)
- #3921 Fix hydration warning by only rendering the SvgFeature "selected feature" and "mouseover" client side (@cmdcolin)
- #3910 Fix feature label offsets in SVG exports with main thread RPC (@cmdcolin)
- #3905 Fix alignments track infinite loading when applying same "Color by" or "Sort by" setting twice (@cmdcolin)
- #3904 Fix "Color by"->"Mapping quality" for CRAM files (@cmdcolin)
- #3902 Fix ability to use plaintext bed in add-track CLI (@cmdcolin)
core- #3929 Fix mouse getting out of sync while dragging resize handle (@cmdcolin)
- #3912 Avoid undefined getConf on assembly.configuration safeReference (@cmdcolin)
- #3887 Add forwardRef to wrapped re-exported lazy components (@garrettjstevens)
- #3866 Fix calculation of width of "view container title" (@cmdcolin)
- #3865 Strip alpha from colors for improved SVG export compatibility (@cmdcolin)
:memo: Documentation
- #3957 Add error handler example for embedded components (@cmdcolin)
- #3913 Add color scheme for pathogenicity for ClinVar config_demo track (@scottcain)
- #3881 Improve some of the extension point documentation (@cmdcolin)
:house: Internal
app-core,core,embedded-corecore- Other
app-core,core,embedded-core,product-core,web-core
Committers: 4
- Caroline Bridge (@carolinebridge-oicr)
- Colin Diesh (@cmdcolin)
- Garrett Stevens (@garrettjstevens)
- Scott Cain (@scottcain) Done in 2.80s.
yarn run v1.22.18 $ lerna-changelog 2.6.3
:rocket: Enhancement
- Other
- #3830 Refactors LGV synteny and pileup with shared mixins (@carolinebridge-oicr)
- #3811 Add ability to show/hide all tracks in category (@cmdcolin)
app-core
:bug: Bug Fix
- #3839 Fix bug where multi-quantitative tracks plotted incorrectly for some bigwigs with empty regions (@cmdcolin)
- #3837 Fix text layout in dotplots with long coordinate strings (@cmdcolin)
- #3825 Fix SVG export compatibility by removing rgba strings (@cmdcolin)
- #3814 Fix suspense fallback to track container for lazy loaded display components (@cmdcolin)
- #3808 Fix track ordering of hierarchical track selector to more closely match the config.json (@cmdcolin)
- #3806 Fix a bug on the BookmarkWidget mui data grid where labels were not saving (@carolinebridge-oicr)
- #3804 Fix version missing from about menu in @jbrowse/react-app (@cmdcolin)
:house: Internal
Committers: 3
- Caroline Bridge (@carolinebridge-oicr)
- Colin Diesh (@cmdcolin)
- Robert Buels (@rbuels) Done in 1.50s.
yarn run v1.22.18 $ lerna-changelog 2.6.2
:rocket: Enhancement
- #3796 Allow workers to load CJS plugins (@garrettjstevens)
- #3783 Add ability for track selector button in synteny view to select individual views (@cmdcolin)
- #3452 Use notarytool for macOS desktop signing (@cmdcolin)
- #3766 Add nextjs circular genome view demo (@cmdcolin)
:bug: Bug Fix
- Other
- #3798 Fix VCF feature starting at 1-based 1 (@cmdcolin)
- #3775 Fix stranded RNA-seq rendering and rename option Color by -> "First-of-pair strand" (@cmdcolin)
- #3758 Adds safety checks on AlignmentsDisplay properties to avoid undefined rendering (@carolinebridge-oicr)
- #3770 Fix potential issue with display searchFeatureByID being undefined (@cmdcolin)
core- #3784 Fix synteny rubberband tooltips when views are exactly the same (@cmdcolin)
- #3782 Fix crash on color picker component using debounce on color property (@carolinebridge-oicr)
- #3767 Check session tracks for text search adapters (@garrettjstevens)
app-core,core,embedded-core,product-core,text-indexing,web-core
:house: Internal
- Other
core,product-core
Committers: 3
- Caroline Bridge (@carolinebridge-oicr)
- Colin Diesh (@cmdcolin)
- Garrett Stevens (@garrettjstevens) Done in 1.55s.
yarn run v1.22.18 $ lerna-changelog 2.6.1
:rocket: Enhancement
- Other
- #3743 Create mixin for shared code between LinearWiggleDisplay and MultiWiggleLinearDisplay (@cmdcolin)
- #3711 Allow synteny data adapters to open files larger than 512Mb (@cmdcolin)
- #3639 Add button to bookmark in jbrowse-web share dialog (@cmdcolin)
- #3631 Add BEDPE add track workflow, avoid showing "Add track" when disabled (@carolinebridge-oicr)
- #3700 Render alignment track arcs instantly after bpPerPx change (@cmdcolin)
- #3695 Reduce re-drawing on alignments track paired read arcs/cloud display types (@cmdcolin)
core- #3725 Filter tracks that match all view.assemblyNames in multi-assembly track selector modes (@cmdcolin)
- #3531 Add @jbrowse/react-app embedded component (@cmdcolin)
- #3653 Evaluate extension point on track config pre-process snapshot (@cmdcolin)
- #3706 Miscellaneous alignments arc/cloud fixes (@cmdcolin)
- #3698 Add column resizers to the variant ANN/CSQ panels (@cmdcolin)
app-core,product-core,web-core__mocks__
:bug: Bug Fix
core- #3749 Avoid re-prompting a user login when refresh token is processed (@cmdcolin)
- #3572 Add OAuth and HTTP BasicAuth servers for local testing, fix some OAuth flows (@garrettjstevens)
- #3708 Add removable-media to jbrowse desktop snap (@cmdcolin)
- #3687 Take into account ML tag when showing MM tag on alignments, misc refactoring (@cmdcolin)
- Other
- #3747 Fix blank lines in GFF crashing text-index (@cmdcolin)
- #3739 Fix specifying the assemblyNames config slot on add-connection CLI (@cmdcolin)
- #3631 Add BEDPE add track workflow, avoid showing "Add track" when disabled (@carolinebridge-oicr)
- #3667 Fix horizontal flip functionality for Hi-C display (@studentshivang)
- #3703 Fix rendering error in alignments tracks when filtering by tag in CRAM file (@Lilas-w)
- #3694 Fix ability to filter certain fields in BAM/CRAM files (@cmdcolin)
- #3691 Fix breakpoint split view alignment connections not pointing at right position in v2.5.0 (@cmdcolin)
- #3686 Fix jbrowse create/jbrowse upgrade CLI intermittent failures (@cmdcolin)
product-core,web-coreapp-core,core,embedded-coreapp-core
:memo: Documentation
- Other
core,embedded-core,product-core
:house: Internal
app-core,core,product-core,text-indexingcore- Other
app-core,core,product-core,web-coreproduct-coreapp-core,core,embedded-core,product-core,text-indexingcore,product-core
Committers: 6
- Caroline Bridge (@carolinebridge-oicr)
- Colin Diesh (@cmdcolin)
- Garrett Stevens (@garrettjstevens)
- Robert Buels (@rbuels)
- Shivang Dwivedi (@studentshivang)
- @Lilas-w Done in 2.84s.
FAQs
JBrowse 2 alignments adapters, tracks, etc.
The npm package @jbrowse/plugin-alignments receives a total of 277 weekly downloads. As such, @jbrowse/plugin-alignments popularity was classified as not popular.
We found that @jbrowse/plugin-alignments demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 0 open source maintainers collaborating on the project.
Package last updated on 04 Oct 2023
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