@jbrowse/plugin-alignments - npm Package Versions

v1.0.1 (2020-11-25)

<details><summary>Packages in this release</summary> <p>

| Package | Download | | --------------------------------------- | ---------------------------------------------------------------- | | @jbrowse/core | https://www.npmjs.com/package/@jbrowse/core | | @jbrowse/development-tools | https://www.npmjs.com/package/@jbrowse/development-tools | | @jbrowse/plugin-alignments | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | @jbrowse/plugin-bed | https://www.npmjs.com/package/@jbrowse/plugin-bed | | @jbrowse/plugin-breakpoint-split-view | | | @jbrowse/plugin-circular-view | | | @jbrowse/plugin-config | https://www.npmjs.com/package/@jbrowse/plugin-config | | @jbrowse/plugin-data-management | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | @jbrowse/plugin-dotplot-view | | | @jbrowse/plugin-filtering | | | @jbrowse/plugin-gff3 | https://www.npmjs.com/package/@jbrowse/plugin-gff3 | | @jbrowse/plugin-hic | | | @jbrowse/plugin-legacy-jbrowse | | | @jbrowse/plugin-linear-comparative-view | | | @jbrowse/plugin-linear-genome-view | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | @jbrowse/plugin-lollipop | | | @jbrowse/plugin-menus | | | @jbrowse/plugin-protein | | | @jbrowse/plugin-rdf | | | @jbrowse/plugin-sequence | https://www.npmjs.com/package/@jbrowse/plugin-sequence | | @jbrowse/plugin-spreadsheet-view | | | @jbrowse/plugin-sv-inspector | | | @jbrowse/plugin-svg | https://www.npmjs.com/package/@jbrowse/plugin-svg | | @jbrowse/plugin-trackhub-registry | | | @jbrowse/plugin-variants | https://www.npmjs.com/package/@jbrowse/plugin-variants | | @jbrowse/plugin-wiggle | https://www.npmjs.com/package/@jbrowse/plugin-wiggle | | @jbrowse/cli | https://www.npmjs.com/package/@jbrowse/cli | | @jbrowse/desktop | | | @jbrowse/protein-widget | | | @jbrowse/react-linear-genome-view | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | @jbrowse/web | |

</p> </details>

:rocket: Enhancement

• Other
  • #1462 Allow importing gzip and bgzip files in the spreadsheet and SV inspector (@cmdcolin)
  • #1460 Add support for more bigBed subtypes and fallback for unsupported types (@peterkxie)
  • #1455 Add the ability to use connection across refreshes in jbrowse-web using session connections (@peterkxie)
  • #1439 1381 improve assembly add form (@elliothershberg)
  • #1433 Make add track warning a bit more lenient (@garrettjstevens)
  • #1420 Add the assembly manager feature to jbrowse-desktop (@elliothershberg)
• core
  • #1458 Add three frame translation to the sequence track (@cmdcolin)
  • #1453 Change "Factory reset" to "Reset session" in jbrowse-web (@teresam856)
  • #1441 New icon for the track selector (@cmdcolin)
  • #1438 Improve assembly loading time by moving to main thread (@cmdcolin)
  • #1434 Create separate config schema for ReferenceSequenceTrack (@elliothershberg)

:bug: Bug Fix

• core
  • #1491 Fix ability to add a PAF synteny track with add-track (@cmdcolin)
  • #1470 Avoid rendering the literal string 'null' in the feature details (@cmdcolin)
• Other
  • #1489 Fix long read vs ref CIGAR rendering for horizontally flipped synteny view (@cmdcolin)
  • #1460 Add support for more bigBed subtypes and fallback for unsupported types (@peterkxie)
  • #1472 Wait on assemblies that are being tracked by the assemblyManager only (@cmdcolin)
  • #1466 Avoid rendering the display and renderer settings in the about this track dialog (@cmdcolin)
  • #1461 Fix usage of jbrowse-cli on node 10.9 related to fs.promises (@cmdcolin)
  • #1452 Bug: search box disappears from LGV header on smaller widths (@teresam856)
  • #1432 Make global variables window.JBrowseSession and window.JBrowseRootModel available in jbrowse-web (@teresam856)
  • #1431 Fix connection tracks not showing up in track selector (@garrettjstevens)
  • #1428 Fix the listVersions behavior of the jbrowse-cli returning duplicate entries (@cmdcolin)
  • #1422 Fix crash from empty ALT field in VCF (@cmdcolin)
  • #1413 Fix ability to add CRAM tracks using the web based add-track GUI (@cmdcolin)

:memo: Documentation

• #1435 Updates to quickstart guides (@garrettjstevens)

:house: Internal

• Other
  • #1437 Use lerna-changelog for changelog generation (@cmdcolin)
  • #1465 Establish minimum node version of 10.4 for using jbrowse-cli tools (@cmdcolin)
  • #1454 Fix GH workflow build (@elliothershberg)
  • #1448 Move building and testing from Travis to GitHub Workflow (@garrettjstevens)
  • #1450 Fix website build (@garrettjstevens)
• core
  • #1468 Have assembly manager get plugin manager from factory function args (@garrettjstevens)

Committers: 5

• Colin Diesh (@cmdcolin)
• Elliot Hershberg (@elliothershberg)
• Garrett Stevens (@garrettjstevens)
• Teresa Martinez (@teresam856)
• @peterkxie