@nightingale-elements/nightingale-msa - npm Package Compare versions

Comparing version 4.0.0 to 4.0.3-gamma.0

dist/components/Canvas/SequenceViewer.d.ts

@@ -17,2 +17,3 @@ import { PropertyValues } from "lit";
     colorScheme: string;
+    overlayConservation: boolean;
     props: SequenceViewerComponentProps;
@@ -19,0 +20,0 @@ private _position?;

dist/nightingale-msa.d.ts

@@ -12,2 +12,3 @@ import "./components/Canvas/SequenceViewer";
     sampleSize: number;
+    overlayConservtion: boolean;
     worker: Worker;
@@ -14,0 +15,0 @@ private sequenceViewer?;

package.json

 {
   "name": "@nightingale-elements/nightingale-msa",
-  "version": "4.0.0",
+  "version": "4.0.3-gamma.0",
   "files": [
@@ -39,3 +39,3 @@ "dist",
   },
-  "gitHead": "39084d4156a720f320867f01b6b91d3d7dddf7d0"
+  "gitHead": "9c0568a331fb69161fedc5c633cb09381cff8730"
 }

README.md

@@ -28,18 +28,22 @@ # nightingale-msa
 
-#### `label-width: (default: 0)`
+#### `label-width: number(default: 0)`
 
 Width reserved to render the labels of the sequences. If the value is `0` the labels won't be rendered.
 
-#### `tile-height: (default: 20)`
+#### `tile-height: number (default: 20)`
 
 Height of each base (AKA tile).
 
-#### `active-label: (default: "")`
+#### `active-label: string (default: "")`
 
 Label to highlight as if selected
 
-#### `conservation-sample-size: (default: 20)`
+#### `conservation-sample-size: number (default: 20)`
 
 One of the color-schemes is `conservation` this requires a precalculation that runs on a web worker. The conservation calculation can be sampled to just the first `n` sequences. Which is defined by this parameter.
 
+#### `overlay-conservation: boolean(default: false)`
+
+When this flag is enable the conservation data is used to modify the color of each base.
+
 ### Methods
@@ -46,0 +50,0 @@

src/components/Canvas/CanvasCache.ts

@@ -1,2 +0,1 @@
-
 import * as shallowEqual from "shallowequal";
@@ -3,0 +2,0 @@ import { minBy } from "lodash-es";

src/components/Canvas/SequenceViewer.ts

@@ -62,2 +62,7 @@ import { property, state, customElement } from "lit/decorators.js";
   colorScheme: string = DEFAULT_COLOR_SCHEME;
+  @property({
+    type: Boolean,
+    attribute: "overlay-conservation",
+  })
+  overlayConservation = false;
 
@@ -80,3 +85,2 @@ @state()
     scrollBarPositionY: "right",
-    overlayConservation: false,
     // TODO: deal with conservation
@@ -294,3 +298,3 @@ conservation: null,
           borderColor: this.props.borderColor,
-          overlayConservation: this.props.overlayConservation,
+          overlayConservation: this.overlayConservation,
           conservation: this.props.conservation,
@@ -556,3 +560,3 @@ });
       borderColor: this.props.borderColor,
-      overlayConservation: this.props.overlayConservation,
+      overlayConservation: this.overlayConservation,
       conservation: this.props.conservation,
@@ -559,0 +563,0 @@ };

src/nightingale-msa.ts

@@ -49,2 +49,7 @@ import { customElement, property } from "lit/decorators.js";
   sampleSize = 20;
+  @property({
+    type: Boolean,
+    attribute: "overlay-conservation",
+  })
+  overlayConservtion = false;
 
@@ -141,2 +146,3 @@ worker = new Worker(
           length=${this.length || 0}
+          ?overlay-conservation=${this.overlayConservtion}
         ></msa-sequence-viewer>
@@ -143,0 +149,0 @@ <div style=${object2style(rightMarginStyle)}></div>

New alerts

No v1

Quality

Package is not semver >=1. This means it is not stable and does not support ^ ranges.

Found 1 instance in 1 package

Improved metrics

Total package byte prevSize

685618

increased by0.18%

Lines of code

3621

increased by0.36%

Number of lines in readme file

88

increased by4.76%

Worsened metrics

Number of low quality alerts

1

increased byInfinity%

No dependency changes