biojs-vis-rohart-msc-test - npm Package Compare versions

Comparing version 0.1.0 to 0.2.0

examples/simple.js

@@ -16,3 +16,5 @@ // if you don't specify a html file, the sniper will generate a div with id "rootDiv"
         // MSC 100/100
-        temp = "Sample: " + d.Replicate_Group_ID +"("+d.chip_id+")<br/>MSC x/100<br/>Prediction value: " + d[y_column] + "<br/>lwr: " + d.lwr + "<br/>upr: " + d.upr;
+        total = d.total_samples;
+        msc_call = d.MSC_Call; 
+        temp = "Sample: " + d.Replicate_Group_ID +"("+d.chip_id+")<br/>MSC "+msc_call+"/"+total+"<br/>Prediction value: " + d[y_column] + "<br/>lwr: " + d.lwr + "<br/>upr: " + d.upr;
         return temp; 
@@ -19,0 +21,0 @@ });

lib/index.js

@@ -713,2 +713,22 @@ /*
 
+
+        // Trying to make a quantative scale using an old way - ended up not using this
+        // https://github.com/mbostock/d3/wiki/Quantitative-Scales#quantize
+        // http://stackoverflow.com/questions/17671252/d3-create-a-continous-color-scale-with-many-strings-inputs-for-the-range-and-dy
+        // pick any number [3-9] for Reds
+        // pick any number [3-11] for RdGy
+        // you can check the number you can use here: https://github.com/mbostock/d3/blob/master/lib/colorbrewer/colorbrewer.js
+
+
+
+
+        // Or we can use something we make up
+        // http://synthesis.sbecker.net/articles/2012/07/16/learning-d3-part-6-scales-colors
+        var numColors = 9;
+
+        var heat_map_colour = d3.scale.linear()
+            .domain([0,200]) 
+            .range(["pink","red"]);
+            
+
         svg.selectAll(".dot") // class of .dot
@@ -734,4 +754,4 @@ .data(options.data) // use the options.data and connect it to the elements that have .dot css
                 function (d){
-                    temp = d.MSC_Type;
-                    color = options.domain_colors[temp];
+                    temp = d.MSC_Call;
+                    color = heat_map_colour(temp);
                     return color;
@@ -744,2 +764,3 @@ }
 
+        graph.heat_map_colour = heat_map_colour;
         graph.svg = svg;
@@ -774,8 +795,8 @@ return graph;
         page_options = graph.page_options;
+        heat_map_colour = graph.heat_map_colour;
+        //graph = this.convert_domain_colors_to_d3(graph);
 
-        graph = this.convert_domain_colors_to_d3(graph);
+        //domains_d3 = graph.options.domains_d3;
+        //colors_d3 = graph.options.colors_d3;
 
-        domains_d3 = graph.options.domains_d3;
-        colors_d3 = graph.options.colors_d3;
-
         /*
@@ -799,5 +820,9 @@ http://chimera.labs.oreilly.com/books/1230000000345/ch08.html#_cleaning_it_up
         */
+
+        legend_values=[200,150,100,50,0];
+
+
         legend_x_axis = page_options.width + 60;
         var legend = svg.selectAll("."+options.legend_class)
-            .data(domains_d3)
+            .data(legend_values)
             .enter().append("g")
@@ -816,3 +841,8 @@ .attr("class", options.legend_class)
             .attr("height", 18)
-            .style("fill", colors_d3);
+            .style("fill", 
+                function(d){
+                    colour = heat_map_colour(d);
+                    return colour;
+                }
+            );
 
@@ -1030,3 +1060,3 @@ legend.append("text")
         graph = this.setup_graph(graph);
-        //graph = this.setup_legend(graph);
+        graph = this.setup_legend(graph);
 
@@ -1033,0 +1063,0 @@ var target = $(options.target);

package.json

 {
   "name": "biojs-vis-rohart-msc-test",
   "description": "BioJS component to provide a graph of the Rohart MSC Test hosted in Stemformatics",
-  "version": "0.1.0",
+  "version": "0.2.0",
   "homepage": "https://github.com/rowlandm/biojs-vis-rohart-msc-test",
@@ -6,0 +6,0 @@ "author": {

New alerts

Dynamic require

Supply chain risk

Dynamic require can indicate the package is performing dangerous or unsafe dynamic code execution.

Found 1 instance in 1 package

Improved metrics

Total package byte prevSize

96776

increased by68.41%

Number of package files

10

increased by11.11%

Lines of code

1846

increased by96.59%

Worsened metrics

Number of low supply chain risk alerts

2

increased byInfinity%

No dependency changes