biojs-vis-rohart-msc-test
Advanced tools
biojs-vis-rohart-msc-test - npm Package Compare versions
Comparing version 0.2.0 to 0.3.0
@@ -715,3 +715,3 @@ require=(function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o<r.length;o++)s(r[o]);return s})({"biojs-vis-rohart-msc-test":[function(require,module,exports){ | ||
| // Trying to make a quantative scale using an old way - ended up not using this | ||
| // Trying to make a quantative scale using an old way - ended up not using this anymore | ||
| // https://github.com/mbostock/d3/wiki/Quantitative-Scales#quantize | ||
@@ -722,13 +722,10 @@ // http://stackoverflow.com/questions/17671252/d3-create-a-continous-color-scale-with-many-strings-inputs-for-the-range-and-dy | ||
| // you can check the number you can use here: https://github.com/mbostock/d3/blob/master/lib/colorbrewer/colorbrewer.js | ||
| // end of not using this anymore | ||
| // Or we can use something we make up | ||
| // http://synthesis.sbecker.net/articles/2012/07/16/learning-d3-part-6-scales-colors | ||
| var numColors = 9; | ||
| var heat_map_colour = d3.scale.linear() | ||
| .domain([0,200]) | ||
| .range(["pink","red"]); | ||
| .domain(options.legend_range) | ||
| .range(options.domain_colours); | ||
@@ -770,23 +767,2 @@ | ||
| this.convert_domain_colors_to_d3 = function(graph){ | ||
| domain_colors = graph.options.domain_colors; | ||
| domain_colors_d3 = Array(); | ||
| domains_d3 = Array(); | ||
| // from domain_colors : {'MSC':'red','Non-MSC':'blue','Unsure':'grey'}, | ||
| // separate into ['MSC','Non-MSC','Unsure'] and | ||
| // ['blue','green','grey'] respective colors. | ||
| for (key in domain_colors){ | ||
| color = domain_colors[key]; | ||
| domains_d3.push(key); | ||
| domain_colors_d3.push(color); | ||
| } | ||
| graph.options.domains_d3 = domains_d3 ; | ||
| graph.options.colors_d3 = d3.scale.ordinal().domain(domains_d3).range(domain_colors_d3); | ||
| return graph; | ||
| } // convert_domain_colors_to_d3 | ||
| this.setup_legend = function(graph){ | ||
@@ -797,7 +773,2 @@ svg = graph.svg; | ||
| heat_map_colour = graph.heat_map_colour; | ||
| //graph = this.convert_domain_colors_to_d3(graph); | ||
| //domains_d3 = graph.options.domains_d3; | ||
| //colors_d3 = graph.options.colors_d3; | ||
| /* | ||
@@ -822,5 +793,4 @@ http://chimera.labs.oreilly.com/books/1230000000345/ch08.html#_cleaning_it_up | ||
| legend_values=[200,150,100,50,0]; | ||
| legend_values=options.legend_values; | ||
| legend_x_axis = page_options.width + 60; | ||
@@ -827,0 +797,0 @@ var legend = svg.selectAll("."+options.legend_class) |
@@ -6,2 +6,3 @@ // if you don't specify a html file, the sniper will generate a div with id "rootDiv" | ||
| var horizontal_lines = {'lwr':0.4337,'upr':0.5169}; | ||
| var legend_values=[200,150,100,50,0]; | ||
@@ -52,3 +53,2 @@ // this tooltip function is passed into the graph via the tooltip | ||
| unique_id: "chip_id", | ||
| domain_colors : {'MSC':'grey','Non-MSC':'grey','Unsure':'grey'}, | ||
| margin:{top: 180, right: 120, bottom: 530, left: 200}, | ||
@@ -58,2 +58,5 @@ horizontal_lines: horizontal_lines, // this gets turned into an array of objects | ||
| show_horizontal_line_labels: true, | ||
| domain_colours : ["pink","red"], | ||
| legend_range: [0,200], | ||
| legend_values: legend_values, | ||
| legend_class: "legend", | ||
@@ -60,0 +63,0 @@ sample_type_order: "BM MSC,BM erythropoietic cells CD235A+,BM granulopoietic cells CD11B+,BM hematopoietic cells CD45+,Developing cortex neural progenitor cells,Ventral midbrain neural progenitor cells,Olfactory lamina propria derived stem cells", |
@@ -714,3 +714,3 @@ /* | ||
| // Trying to make a quantative scale using an old way - ended up not using this | ||
| // Trying to make a quantative scale using an old way - ended up not using this anymore | ||
| // https://github.com/mbostock/d3/wiki/Quantitative-Scales#quantize | ||
@@ -721,13 +721,10 @@ // http://stackoverflow.com/questions/17671252/d3-create-a-continous-color-scale-with-many-strings-inputs-for-the-range-and-dy | ||
| // you can check the number you can use here: https://github.com/mbostock/d3/blob/master/lib/colorbrewer/colorbrewer.js | ||
| // end of not using this anymore | ||
| // Or we can use something we make up | ||
| // http://synthesis.sbecker.net/articles/2012/07/16/learning-d3-part-6-scales-colors | ||
| var numColors = 9; | ||
| var heat_map_colour = d3.scale.linear() | ||
| .domain([0,200]) | ||
| .range(["pink","red"]); | ||
| .domain(options.legend_range) | ||
| .range(options.domain_colours); | ||
@@ -769,23 +766,2 @@ | ||
| this.convert_domain_colors_to_d3 = function(graph){ | ||
| domain_colors = graph.options.domain_colors; | ||
| domain_colors_d3 = Array(); | ||
| domains_d3 = Array(); | ||
| // from domain_colors : {'MSC':'red','Non-MSC':'blue','Unsure':'grey'}, | ||
| // separate into ['MSC','Non-MSC','Unsure'] and | ||
| // ['blue','green','grey'] respective colors. | ||
| for (key in domain_colors){ | ||
| color = domain_colors[key]; | ||
| domains_d3.push(key); | ||
| domain_colors_d3.push(color); | ||
| } | ||
| graph.options.domains_d3 = domains_d3 ; | ||
| graph.options.colors_d3 = d3.scale.ordinal().domain(domains_d3).range(domain_colors_d3); | ||
| return graph; | ||
| } // convert_domain_colors_to_d3 | ||
| this.setup_legend = function(graph){ | ||
@@ -796,7 +772,2 @@ svg = graph.svg; | ||
| heat_map_colour = graph.heat_map_colour; | ||
| //graph = this.convert_domain_colors_to_d3(graph); | ||
| //domains_d3 = graph.options.domains_d3; | ||
| //colors_d3 = graph.options.colors_d3; | ||
| /* | ||
@@ -821,5 +792,4 @@ http://chimera.labs.oreilly.com/books/1230000000345/ch08.html#_cleaning_it_up | ||
| legend_values=[200,150,100,50,0]; | ||
| legend_values=options.legend_values; | ||
| legend_x_axis = page_options.width + 60; | ||
@@ -826,0 +796,0 @@ var legend = svg.selectAll("."+options.legend_class) |
| { | ||
| "name": "biojs-vis-rohart-msc-test", | ||
| "description": "BioJS component to provide a graph of the Rohart MSC Test hosted in Stemformatics", | ||
| "version": "0.2.0", | ||
| "version": "0.3.0", | ||
| "homepage": "https://github.com/rowlandm/biojs-vis-rohart-msc-test", | ||
@@ -6,0 +6,0 @@ "author": { |
Worsened metrics
- Total package byte prevSize
- decreased by-1.68%
95153
- Lines of code
- decreased by-1.9%
1811