blastjs

blast.js

About

Examples

Example applications can be found at github.com/wookoouk/blastjs-examples

Install

npm install blastjs

Usage

make database

var blast = require('blastjs');

var type = 'nucl';
var fileIn = './test.fasta';
var outPath = './';
var name = 'example';


blast.makeDB(type, fileIn, outPath, name, function(err){
  if(err){
    console.error(err);   
  } else {
    console.log('database created at', outPath);
  }
});

blast n

var blast = require('blastjs');

blast.outputString(true); *optional*

var dbPath = './example';
var query = 'CTAATACCGAATAAGGTCAGTTAATTTGTTAATTGATGAAAGGAAGCCTT';

blast.blastN(dbPath, query, function (err, output) {
  if(!err){
    console.log(output);
  }
});