A Node.js module for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC). Read more about this service at the cBio Cancer Genomics Portal.
npm install cgdsvar CGDS = require("cgds");var cgds = new CGDS("http://www.cbioportal.org/public-portal/webservice.do");See Web API for more details.
getTypesOfCancer()Retrieves a list of all the clinical types of cancer.
getCancerStudies()Retrieves meta-data regarding cancer studies.
getGeneticProfiles(cancer_study_id)Retrieves meta-data regarding all genetic profiles, e.g. mutation or copy number profiles, stored about a specific cancer study.
getCaseLists(cancer_study_id)Retrieves meta-data regarding all case lists stored about a specific cancer study.
getProfileData(case_set_id, genetic_profile_id, gene_list)Retrieves genomic profile data for one or more genes.
getMutationData(genetic_profile_id, case_set_id, gene_list)Retrieves the full set of annotated extended mutation data.
getClinicalData(case_set_id)Retrieves overall survival, disease free survival and age at diagnosis for specified cases.
FAQs
A module for querying the Cancer Genomics Data Server (CGDS).
The npm package cgds receives a total of 2 weekly downloads. As such, cgds popularity was classified as not popular.
We found that cgds demonstrated a not healthy version release cadence and project activity because the last version was released a year ago. It has 1 open source maintainer collaborating on the project.
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