Huge News!Announcing our $40M Series B led by Abstract Ventures.Learn More
Socket
Sign inDemoInstall
Socket

pipeline-builder

Package Overview
Dependencies
Maintainers
1
Versions
32
Alerts
File Explorer

Advanced tools

Socket logo

Install Socket

Detect and block malicious and high-risk dependencies

Install

pipeline-builder

Pipeline Builder

  • 0.3.10-dev.297
  • Source
  • npm
  • Socket score

Version published
Weekly downloads
21
decreased by-22.22%
Maintainers
1
Weekly downloads
 
Created
Source

Build Status Coverage Status

Pipeline Builder

Pipeline Builder is a JavaScript library for visualizing and constructing bioinformatics workflows, using Workflow Description Language (WDL)

  • Visualization of WDL scripts https://github.com/broadinstitute/wdl
  • Visual editor for creation and customization of a bioinformatics workflow, composed from a set of tools
  • Generation of a WDL (Workflow Definition Language) script for the workflow
  • Integration API into on-premises and cloud workflow environments

general-view

Demo environment

Example of a Pipeline Builder usage is available at http://pb.opensource.epam.com built on master branch and http://pb.opensource.epam.com:10000 built on dev branch

This demo application demonstrates major capabilities of a Pipeline Builder

Description of the demo application is available at Demo application overview

Installation and Usage

Install pipeline-builder the usual way:

npm install --save pipeline-builder

Then require it

const pipeline = require('pipeline-builder');
console.log(pipeline.VERSION);

Refer to the API docs and tutorials for more details

WDL Parser/Visualizer limitations

The following WDL features, that require more specific parsing or visualization, are not supported at the moment:

Contribution

Ensure that the latest git (e.g Git For Windows) and Node.js v6 LTS are installed. You're also encouraged to use Yarn package manager to guarantee that package versions are consistent across all build machines. Gulp.js v3 is used as a build framework.

# grab the project
git clone https://github.com/epam/pipeline-builder.git

# install necessary Node.js modules
cd pipeline-builder
yarn global add gulp-cli
yarn install

# test and build everything
gulp

# or just start webpack development server with live reload
gulp serve

Keywords

FAQs

Package last updated on 27 Mar 2018

Did you know?

Socket

Socket for GitHub automatically highlights issues in each pull request and monitors the health of all your open source dependencies. Discover the contents of your packages and block harmful activity before you install or update your dependencies.

Install

Related posts

SocketSocket SOC 2 Logo

Product

  • Package Alerts
  • Integrations
  • Docs
  • Pricing
  • FAQ
  • Roadmap
  • Changelog

Packages

npm

Stay in touch

Get open source security insights delivered straight into your inbox.


  • Terms
  • Privacy
  • Security

Made with ⚡️ by Socket Inc