ALFA provides a global overview of features distribution composing NGS dataset(s). Given a set of aligned reads (BAM files) and an annotation file (GTF format), the tool produces plots of the raw and normalized distributions of those reads among genomic categories (stop codon, 5'-UTR, CDS, intergenic, etc.) and biotypes (protein coding genes, miRNA, tRNA, etc.). Whatever the sequencing technique, whatever the organism.
See all information on alfa GitHub project page <https://github.com/biocompibens/ALFA>_.
Mathieu Bahin, Benoit Noel, Auguste Genovesio (Biocomp team, IBENS, Paris, France)
Charles Bernard, Leila Bastianelli and Valentine Murigneux
FAQs
A simple software to get a quick overview of features composing NGS dataset(s).
We found that alfa demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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