bgzip provides streams for block gzip files.
Cython is used under the hood to bypass Python's GIL and provide fast, parallelized inflation/deflation.
with open("my_bgzipped_file.gz", "rb") as raw:
with bgzip.BGZipReader(raw) as fh:
data = fh.read(number_of_bytes)
with open("my_bgzipped_file.gz", "wb") as raw:
with bgzip.BGZipWriter(raw) as fh:
fh.write(my_data)
pip install bgzip
bgzip requires openmp. On MacOS it can be installed with:
brew install llvm
Project home page GitHub
Package distribution PyPI
Please report bugs, issues, feature requests, etc. on GitHub.
getm was created by Brian Hannafious at the UCSC Genomics Institute.
FAQs
Utilities working with blocked gzip streams.
We found that bgzip demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 2 open source maintainers collaborating on the project.
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