Biobb_disc4alldata is a complete code wrapper to interrogate the Disc4All pre-process database REST API.
Biobb_template is a complete code template to promote and facilitate the creation of new Biobbs by the community. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: latest API documentation.
v3.0.0 2021.3
If you have no experience with anaconda, please first take a look to the New with anaconda? section of the official documentation.
Although the biobb_template repository is available at GitHub and thus you can clone it, we strongly recommend you to [download it compressed]and start your new project from scratch.
Since the Bioconda package is not ready, after the download of the directory is necessary to set up the conda environment for the right functioning:
conda create conda_env/environment.yml
conda activate biobb_disgenet
If the package is not working, set it up manually:
python setup.py build
python setup.py install
Additionally, it's recommendable to configure binary paths in your environment in order to ease the command line execution. More info about this subject in the Binary path configuration section of the official documentation.
Click here to find the API Documentation example for this template and here for Command Line documentation.
And here you can find the full documentation about how to build a new BioExcel building block from scratch.
This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU H2020 823830, EU H2020 675728).
Licensed under the Apache License 2.0, see the file LICENSE for details.
FAQs
Biobb_disc4alldata is a complete code wrapper to interrogate the Disc4All pre-process database REST API.
We found that biobb-disc4alldata demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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