CAS-Tools is a comprehensive utility package designed to facilitate the effective use and manipulation of the Cell Annotation Schema (CAS) in single-cell transcriptomics data analysis. CAS supports recording the rationale and evidence for single cell annotation, including gene expression evidence and details of automated annotation transfer. The standard can be saved as a separate JSON file with a resolvable link to a martix (AnnData) file containing annotated data, or embedded in the annotated AnnData file.
You can install CAS-Tools pypi package using pip:
pip install cas-tools
CAS-Tools simplifies the use of CAS by offering a set of programmatically accessible operations including:
CAS-tools functionality can be accessed via imported object in python or via a command line tool. For CLI tool function details please see:
FAQs
Cell Annotation Schema tools.
We found that cas-tools demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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