dna-features-viewer
Readme
DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files:
.. figure:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer/master/examples/translator_with_custom_colors.png :width: 500px :align: center :alt: some figure
DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.
PIP installation:
.. code:: bash
pip install dna_features_viewer
Web documentation:
<https://edinburgh-genome-foundry.github.io/DnaFeaturesViewer/>_
Github Page
<https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer>_
Live demo
<http://cuba.genomefoundry.org/plot-sequence-features>_
License: MIT, Copyright Edinburgh Genome Foundry
.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png :target: https://edinburgh-genome-foundry.github.io/
DNA Features Viewer is part of the EGF Codons <https://edinburgh-genome-foundry.github.io/>_ synthetic biology software suite for DNA design, manufacturing and validation.
FAQs
Plot features from DNA sequences (e.g. Genbank) with Python
We found that dna-features-viewer demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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