EDAM is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License (CC BY-SA 4.0) and can be found at http://edamontology.org/.
EDAM is described in the following article. If you use, or refer to EDAM or its part, please cite:
Ison, J., Kalaš, M., Jonassen, I., Bolser, D., Uludag, M., McWilliam, H., Malone, J., Lopez, R., Pettifer, S. and Rice, P. (2013). EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. Bioinformatics, 29(10): 1325-1332. DOI: 10.1093/bioinformatics/btt113 PMID: 23479348 The article is freely available without restrictions (Open access)
This project is just a Python packaged version of that data - initially developed to avoid non-Python dependencies within Galaxy packages that need to leverage the ontology.
.. to_doc
FAQs
Versioned, Python packaged EDAM ontology (http://edamontology.org/) data.
We found that edam-ontology demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
Did you know?
Socket for GitHub automatically highlights issues in each pull request and monitors the health of all your open source dependencies. Discover the contents of your packages and block harmful activity before you install or update your dependencies.
Security News
PyPI confirms no security flaws were exploited in the Ultralytics supply chain attack and highlights improvements for safer package publishing.
Security News
Research
The Socket Research Team breaks down a malicious wrapper package that uses obfuscation to harvest credentials and exfiltrate sensitive data.
Research
Security News
Attackers used a malicious npm package typosquatting a popular ESLint plugin to steal sensitive data, execute commands, and exploit developer systems.