.. image:: https://badge.fury.io/py/epydemic.svg :target: https://badge.fury.io/py/epydemic
.. image:: https://readthedocs.org/projects/pyepydemic/badge/?version=latest :target: https://pyepydemic.readthedocs.io/en/latest/index.html
.. image:: https://github.com/simoninireland/epydemic/actions/workflows/ci.yaml/badge.svg :target: https://github.com/simoninireland/epydemic/actions/workflows/ci.yaml
.. image:: https://pepy.tech/badge/epydemic :target: https://pepy.tech/project/epydemic
.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.6875267.svg :target: https://doi.org/10.5281/zenodo.6875267
.. image:: https://www.gnu.org/graphics/gplv3-88x31.png :target: https://www.gnu.org/licenses/gpl-3.0.en.html
epydemic is a Python library that implements simulations of
epidemic (and other) processes on networks. Epidemic processes are
very important in both network science and its applications. The most
common application is to study the ways in which diseases progress in
different network conditions, depending on their infectiousness and
other properties, but epydemic can be used to study any network
processes of interest.
epydemic provides simulation under synchronous and stochastic
(Gillespie) dynamics, using the well-known networkx package to
represent and manipulate networks. It supports a generic model for
compartmented models of disease with several standard models provided
and which can be extended to other, more complex, diseases. It also
supports other network processes such as addition-deletion networks
and pulse-coupled synchronisation, generators for several different
ensembles of random networks, and a library for handling generating
functions used in network analysis.
epydemic is built on top of the epyc experiment management
library, allowing simulations to be conducted at scale on individual
machines, multicore machines, and parallel computing clusters.
You can install epydemic directly from PyPi using pip:
::
pip install epydemic
The master distribution of epydemic is hosted on GitHub. To obtain a
copy, just clone the repo:
::
git clone git@github.com:simoninireland/epydemic.git
cd epydemic
pip install .
API documentation for epydemic is available on ReadTheDocs <https://pyepydemic.readthedocs.io/en/latest/>_
(please note the slightly different project name).
Copyright (c) 2017-2024, Simon Dobson simoninireland@gmail.com
Licensed under the GNU General Public Licence v3 <https://www.gnu.org/licenses/gpl-3.0.en.html>_.
FAQs
Epidemic network simulations in Python
We found that epydemic demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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