fmriprep-docker

The fMRIPrep on Docker wrapper

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

This is a lightweight Python wrapper to run fMRIPrep. It generates the appropriate Docker commands, providing an intuitive interface to running the fMRIPrep workflow in a Docker environment. Docker must be installed and running. This can be checked running ::

docker info

Please acknowledge this work using the citation boilerplate that fMRIPrep includes in the visual report generated for every subject processed. For a more detailed description of the citation boilerplate and its relevance, please check out the NiPreps documentation <https://www.nipreps.org/intro/transparency/#citation-boilerplates>. Please report any feedback to our GitHub repository <https://github.com/nipreps/fmriprep>.