Experimental Python 3 Bindings to the native GenomicsDB library. Only queries are supported for now. For importing vcf files into GenomicsDB, use the command line tools - vcf2genomicsdb or gatk GenomicsDBImport.
Install genomicsdb binary wheels from PyPi with pip:
pip install genomicsdb
Or explicitly from a source distribution
# Download the source distribution from https://pypi.org/project/genomicsdb/#files as genomicsdb.source.tar.gz
tar xvf genomicsdb.source.tar.gz
cd genomicsdb-<version>
python setup.py install
See instructions for local builds and running tests.
FAQs
Experimental Python Bindings for querying GenomicsDB
We found that genomicsdb demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 3 open source maintainers collaborating on the project.
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