Integrative analysis for single-cell RNA sequencing and single-cell TCR sequencing data
immunopipe is a pipeline based on pipen framework. It includes a set of processes for scTCR- and scRNA-seq data analysis in R, python and bash. The pipeline is designed to be flexible and configurable.
See a more detailed flowchart here.
https://pwwang.github.io/immunopipe
If you have any suggestions for more analyses, please feel free to open an issue here
https://github.com/pwwang/immunopipe-example
There are some datasets with both scRNA-seq and scTCR-seq data available in the publications. The data were reanalyzed using immunopipe with the configurations provided in each repository, where the results are also available.
Check out the gallery for more details.
FAQs
A pipeline for integrative analysis for scTCR- and scRNA-seq data
We found that immunopipe demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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