You can install moped using pip
pip install moped
However, you will still need to install NCBI Blast if you want to use the genome / proteome reconstruction methods
If you are using conda or mamba, you can install blast from bioconda:
conda install -c bioconda blast==2.12.0
mamba install -c bioconda blast==2.12.0
If you want to install BLAST yourself:
export PATH="your_blast_directory/bin:$PATH"Check out our tutorial on readthedocs
All contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome. If you want to contribute code to the project, please consider our contribution guide
moped is licensed under GPL 3
If you experience issues using the software please contact us through our issues page.
FAQs
Stoichiometric metabolic modelling
We found that moped demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 2 open source maintainers collaborating on the project.
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