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pharus

A generic REST API server backend for DataJoint pipelines.

  • 0.8.12
  • PyPI
  • Socket score

Maintainers
2

User Documentation

pharus is a generic REST API server backend for DataJoint <https://datajoint.io>_ pipelines built on top of flask, datajoint, and pyjwt.

  • Documentation <https://datajoint.github.io/pharus>_
  • PyPi Package <https://pypi.org/project/pharus/>_
  • Docker Image <https://hub.docker.com/r/datajoint/pharus>_
  • Release <https://github.com/datajoint/pharus/releases/latest>_
  • Source <https://github.com/datajoint/pharus>_

Installation

If you have not done so already, please install the following dependencies.

  • Docker <https://docs.docker.com/get-docker/>_
  • Docker Compose <https://docs.docker.com/compose/install/>_

Prerequisites

Download the docker-compose-deploy.yaml docker environment from the source located here <https://github.com/datajoint/pharus/releases/latest/download/docker-compose-deploy.yaml>_.

Running the API server

To start the API server, use the command:

.. code-block:: bash

    PHARUS_VERSION=0.7.3 docker-compose -f docker-compose-deploy.yaml up -d

To stop the API server, use the command:

.. code-block:: bash

    PHARUS_VERSION=0.7.3 docker-compose -f docker-compose-deploy.yaml down

References

  • DataJoint

    • https://datajoint.io
  • DataJoint LabBook (a companion frontend)

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