polly-python

About Polly Library

This package is intended to be used by Polly users - bioinformaticians, data scientists, and life science researchers - working in drug discovery and development.

Installation

Polly-python can be installed by running:

pip install polly-python

Key features:

• Discover biomedical datasets specific to their research requirements by querying omixatlas which have a well-defined schema and curated metadata fields.
• Expanding the query by using ontological mappings for diseases.
• Download the datasets of interest and use them for further enrichment and analysis using other open-source bash, R and Python packages commonly used in life-science research.
• Seamlessly interact with the Schema of the OmixAtlas by using fetch, update, and post functions.
• Create new Workspaces and fetch the list of existing ones.
• Upload and Download files and folders from Workspace.
• Save dataset of interest from OmixAtlas to Workspace.

Get Started

• Examples of characteristics and functions of polly-python can be found as Jupyter Notebook here.
• Full documentation available here.

Contributing Guidelines

• Refer to the CONTRIBUTING.md file for detailed information

Contacts

If you have questions, suggestions or problems, feel free to open an issue here.

You can contact us at:

• [e-mail]
• [e-mail]