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pydactim

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pydactim

A library to post-process MRI data

  • 1.0.18
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  • PyPI
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PyDactim

Python 3.7 PyPI version Doc Doc

Description

Warning : Currently in development

A MRI preprocessing tool which provides a dozen of functions easy to use made from some of the most popular Python libraries 🚀

It includes :

  • Transformations : skull stripping, resampling, registration, histogram matching, bias field correction, normalization and so on
  • Preprocessing : BIDS compatible, preprocess all of your patient data with only two lines of code
  • Conversion : Dicom to Nifti, Nifti to Dicom
  • Sorting : an elegant way to organize your Dicom files
  • Anonymization : Dicom files can be anonymized according to your own rules
  • Visualization : 2D and 3D light viewer
  • Spectroscopy : generation of mask of the MRS voxel/slab

Installation

Requires at least Python 3.7 or above. This library uses a lot of common libraries in image processing as such as Pytorch, Torchio, Numpy, Nibabel, SimpleITK, Matplotlib, Pydicom, Dicom2nifti and so more !

Can be quickly installed with pip :

pip install pydactim

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