reaction-system

Reaction System

A Python package for handling Reaction Systems and RsFunctions (partially mapped result functions) with minimization capabilities.

Overview

Your Package Name provides functionality for working with Reaction Systems and RsFunctions. It includes methods for minimization, mapping, support analysis, and more.

Features

• Reaction System Handling: Create and analyze Reaction Systems.
• RsFunction Operations: Perform minimization operations on RsFunctions to convert into ReactionSystems.

Installation

pip install your-package-name

Usage

Here's a quick example of using the Reaction System package:

from reaction_system import ReactionSystem, RsFunction

# Create a Reaction System
reaction_system = ReactionSystem(5)
reaction_system.push([1, 2, 3], [], [4, 5])

# Minimize the Reaction System over rank, or degree
rs_rank = reaction_system.minimize_rank()
rs_rank_exact = reaction_system.minimize_rank_exact()
rs_degree = reaction_system.minimize_rank()

# Get the reactions from a reaction system
for reaction in rs_rank.reactions():
  print(reaction, reaction.enabled([1, 2, 3, 4]))

# Create an RsFunction
rs_function = RsFunction(5)
rs_function.add([1, 2], [3, 4])
rs_function.add([1, 3], [2, 4])

# Get a minimum corresponding Reaction System
rs_rank = rs_function.minimize_rank()
rs_rank_exact = rs_function.minimize_rank_exact()
rs_degree = rs_function.minimize_rank()

print(rs_rank)

Contributing

Contributions are welcome! If you have suggestions, bug reports, or want to contribute code, please open an issue or submit a pull request.