A GUI editor to create and edit spatial SBML models of bio-chemical reactions and simulate them using the dune-copasi solver for reaction-diffusion systems.
To get started, download and run the GUI for your operating system
| Linux | MacOS Arm64 | MacOS Intel | Windows |
|---|---|---|---|
 |  | |  |
Or take a look at our website or the documentation
Pre-release preview binaries are also available which are built from the main branch and can be used for testing new features before the next release:
Note: on linux some additional system libraries are required that may not be installed by default. To install them:
sudo yum install xcb-util-image xcb-util-keysyms xcb-util-renderutil xcb-util-wm
Bug reports and feature requests are very welcome, as are fixes or improvements to the documentation (to edit a page in the documentation, click the 'Edit on GitHub' button in the top right).
If you are interested in contributing code, please see the contributing guidelines.
Spatial Model Editor makes use of the following open source libraries:
dune-copasi - license: GPL2 + runtime exception
QCustomPlot - license: GPL
LLVM Core - license: Apache 2.0 License with LLVM exceptions
GNU Multiple Precision Arithmetic Library - license: LGPL
Computational Geometry Algorithms Library - license: GPL
oneTBB - license: Apache-2.0
Open Source Computer Vision Library - license: Apache-2.0
LibCombine - license: BSD
The source code in this repository is released under the MIT license, which is a permissive GPL-compatible license.
The open source libraries that it uses are either also released under a permissive GPL-compatible license, or under a GPL license. As described in the gpl-faq, this means that the work as a whole is then licensed under the GPL.
FAQs
Spatial Model Editor python bindings
We found that sme demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 2 open source maintainers collaborating on the project.
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