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Generate an heatmap comparing overlaps between 2 set of labels in a pandas dataframe. This is useful in single-cell to compare the overlap between two clustering methods or 2 sets of cell type labels.
pip install twogroups-heatmap
from twogroups_heatmap import intersection_heatmap
import pandas as pd
df = pd.DataFrame(
{
"cluster1": ["A", "A", "B", "B", "C", "C"],
"cluster2": ["A", "B", "B", "C", "C", "D"],
}
)
intersection_heatmap(df, xcol="cluster1", ycol="cluster2")
FAQs
Create a heatmap of representing intersection between two groups
We found that twogroups-heatmap demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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