Extract the database included in the Bioconductor annotation package and use it in the Ruby gem.
gem install biocgem
Short options
biocgem new \
-n org.Hs.eg.db \
-s org.Hs.eg.sqlite \
-v 3.14.0
Full options
biocgem new --bioc_package_name org.Mm.eg.db \
--bioc_sqlite_database_name org.Mm.eg.sqlite \
--gem_icon :mouse: \
--gem_constant_name OrgMmEgDb \
--gem_require_name org_mm_eg_db \
--bioc_package_sha256sum 56f228448b50f1cea0fc15d6f61b1e94359ef885336034bf346693315390ad45 \
--bioc_version 3.14 \
--bioc_package_version 3.14.0
cd org.Hs.eg.db
rake extdata:download
# rake test
rake install
With all due respect to the R language and Bioconductor maintainers...
Bug reports and pull requests are welcome on GitHub at https://github.com/ruby-on-bioc/biocgem.
The gem is available as open source under the terms of the MIT License.
FAQs
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We found that biocgem demonstrated a not healthy version release cadence and project activity because the last version was released a year ago. It has 1 open source maintainer collaborating on the project.
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