Huge News!Announcing our $40M Series B led by Abstract Ventures.Learn More →
Socket
Sign inDemoInstall
Socket
Sign inDemoInstall

@a_kawashiro/jendeley

Package Overview
Dependencies
Maintainers
1
Versions
62
Alerts
File Explorer

Advanced tools

License
Socket logo

Install Socket

Detect and block malicious and high-risk dependencies

Install

@a_kawashiro/jendeley - npm Package Compare versions

Comparing version 0.0.6 to 0.0.7

built-frontend/static/js/main.9395996d.js
built-frontend/static/js/main.9395996d.js.LICENSE.txt
built-frontend/static/js/main.9395996d.js.map
dist/constants.js
dist/constants.js.map

30

dist/gen.js

@@ -23,2 +23,3 @@ "use strict";

const logger_1 = require("./logger");
const constants_1 = require("./constants");
function walkPDFDFS(dir) {

@@ -134,2 +135,10 @@ if (!fs_1.default.existsSync(dir)) {

exports.getDocIDFromTexts = getDocIDFromTexts;
function getDocIDFromUrl(url) {
const regexpArxiv = new RegExp("https://arxiv[.]org/pdf/([0-9]{4}[.][0-9]{4,5})[.]pdf", "g");
const foundArxiv = [...url.matchAll(regexpArxiv)];
for (const f of foundArxiv) {
return { doi: null, isbn: null, arxiv: f[1], path: null };
}
return null;
}
function getDocIDManuallyWritten(pdf) {

@@ -220,3 +229,3 @@ const regexpDOI1 = new RegExp("(doi_10_[0-9]{4}_[0-9]{4,}([_-][0-9()-]{6,})?)", "g");

if (path_1.default.basename(pdf, ".pdf").endsWith("no_id") ||
pdf.includes("[jendeley no id]")) {
pdf.includes(constants_1.JENDELEY_NO_ID)) {
return {

@@ -272,3 +281,3 @@ doi: null,

exports.getDocIDFromTitle = getDocIDFromTitle;
function getDocID(pdf, papers_dir, is_book) {
function getDocID(pdf, papers_dir, is_book, download_url) {
return __awaiter(this, void 0, void 0, function* () {

@@ -280,2 +289,8 @@ const pdf_fullpath = path_1.default.join(papers_dir, pdf);

}
if (download_url != null) {
const docIDFromUrl = getDocIDFromUrl(download_url);
if (docIDFromUrl != null) {
return docIDFromUrl;
}
}
// Titles of chapters are sometimes confusing such as "Reference".

@@ -448,3 +463,3 @@ if (!is_book) {

exports.genDummyDB = genDummyDB;
function registerNonBookPDF(papers_dir, pdf, json_db, comments, tags, rename_using_title) {
function registerNonBookPDF(papers_dir, pdf, json_db, comments, tags, rename_using_title, download_url) {
return __awaiter(this, void 0, void 0, function* () {

@@ -459,3 +474,3 @@ logger_1.logger.info("papers_dir = " +

comments);
const docID = yield getDocID(pdf, papers_dir, false);
const docID = yield getDocID(pdf, papers_dir, false, download_url);
logger_1.logger.info("docID = " + JSON.stringify(docID));

@@ -534,2 +549,5 @@ const t = yield getJson(docID, pdf);

}
if (p.includes(constants_1.JENDELEY_NO_TRACK)) {
continue;
}
logger_1.logger.info("Processing " + p);

@@ -543,3 +561,3 @@ let is_book = false;

is_book = true;
const docID = yield getDocID(p, papers_dir, true);
const docID = yield getDocID(p, papers_dir, true, null);
const t = yield getJson(docID, p);

@@ -557,3 +575,3 @@ if (t != null && t[0]["id_type"] == "isbn") {

if (!is_book) {
json_db = yield registerNonBookPDF(papers_dir, p, json_db, "", [], false);
json_db = yield registerNonBookPDF(papers_dir, p, json_db, "", [], false, null);
}

@@ -560,0 +578,0 @@ }

43

dist/gen.test.js

@@ -25,3 +25,3 @@ "use strict";

const pdf = "DistributedLearning/[Jeffrey Dean] Large Scale Distributed Deep Networks [jendeley no id].pdf";
const docID = yield (0, gen_1.getDocID)(pdf, "/hoge/", false);
const docID = yield (0, gen_1.getDocID)(pdf, "/hoge/", false, null);
const t = yield (0, gen_1.getJson)(docID, pdf);

@@ -49,3 +49,3 @@ expect(t).toBeTruthy();

const pdf4 = "hoge_no_id.pdf";
const docID4 = yield (0, gen_1.getDocID)(pdf4, "/hoge/", false);
const docID4 = yield (0, gen_1.getDocID)(pdf4, "/hoge/", false, null);
expect(docID4).toStrictEqual({

@@ -58,5 +58,16 @@ arxiv: null,

}));
test("arXiv from URL", () => __awaiter(void 0, void 0, void 0, function* () {
const pdf = "hoge.pdf";
const url = "https://arxiv.org/pdf/2212.07677.pdf";
const docID = yield (0, gen_1.getDocID)(pdf, "/hoge/", false, url);
expect(docID).toStrictEqual({
arxiv: "2212.07677",
doi: null,
isbn: null,
path: null,
});
}));
test("ISBN from path", () => __awaiter(void 0, void 0, void 0, function* () {
const pdf5 = "hoge_isbn_9781467330763.pdf";
const docID5 = yield (0, gen_1.getDocID)(pdf5, "/hoge/", false);
const docID5 = yield (0, gen_1.getDocID)(pdf5, "/hoge/", false, null);
expect(docID5).toStrictEqual({

@@ -71,3 +82,3 @@ arxiv: null,

const pdf6 = "hoge_doi_10_1145_3290364.pdf";
const docID6 = yield (0, gen_1.getDocID)(pdf6, "/hoge/", false);
const docID6 = yield (0, gen_1.getDocID)(pdf6, "/hoge/", false, null);
expect(docID6).toStrictEqual({

@@ -80,3 +91,3 @@ arxiv: null,

const pdf7 = "A Dependently Typed Assembly Language_doi_10_1145_507635_507657.pdf";
const docID7 = yield (0, gen_1.getDocID)(pdf7, "/hoge/", false);
const docID7 = yield (0, gen_1.getDocID)(pdf7, "/hoge/", false, null);
expect(docID7).toStrictEqual({

@@ -91,3 +102,3 @@ arxiv: null,

const pdf2 = "DependentType/[EDWIN BRADY] Idris, a General Purpose Dependently Typed Programming Language- Design and Implementation_doi_10_1017_S095679681300018X.pdf";
const docID2 = yield (0, gen_1.getDocID)(pdf2, "/hoge/", false);
const docID2 = yield (0, gen_1.getDocID)(pdf2, "/hoge/", false, null);
expect(docID2).toStrictEqual({

@@ -100,3 +111,3 @@ arxiv: null,

const pdf4 = "MemoryModel/[Scott Owens, Susmit Sarkar, Peter Sewell] A Better x86 Memory Model x86-TSO_doi_10_1007_978-3-642-03359-9_27.pdf";
const docID4 = yield (0, gen_1.getDocID)(pdf4, "/hoge/", false);
const docID4 = yield (0, gen_1.getDocID)(pdf4, "/hoge/", false, null);
expect(docID4).toStrictEqual({

@@ -109,3 +120,3 @@ arxiv: null,

const pdf5 = "Riffle An Efficient Communication System with Strong Anonymity_doi_10_1515_popets-2016-0008.pdf";
const docID5 = yield (0, gen_1.getDocID)(pdf5, "/hoge/", false);
const docID5 = yield (0, gen_1.getDocID)(pdf5, "/hoge/", false, null);
expect(docID5).toStrictEqual({

@@ -118,3 +129,3 @@ arxiv: null,

const pdf7 = "[Peter Dybjer] Inductive families_doi_10_1007_BF01211308.pdf";
const docID7 = yield (0, gen_1.getDocID)(pdf7, "/hoge/", false);
const docID7 = yield (0, gen_1.getDocID)(pdf7, "/hoge/", false, null);
expect(docID7).toStrictEqual({

@@ -127,3 +138,3 @@ arxiv: null,

const pdf9 = "[Henk Barendregt] Lambda Calculus with Types_doi_10_1017_CBO9781139032636.pdf";
const docID9 = yield (0, gen_1.getDocID)(pdf9, "/hoge/", false);
const docID9 = yield (0, gen_1.getDocID)(pdf9, "/hoge/", false, null);
expect(docID9).toStrictEqual({

@@ -138,3 +149,3 @@ arxiv: null,

const pdf1 = "Call-by-name, call-by-value and the λ-calculus_doi_10_1016_0304-3975(75)90017-1.pdf";
const docID1 = yield (0, gen_1.getDocID)(pdf1, "/hoge/", false);
const docID1 = yield (0, gen_1.getDocID)(pdf1, "/hoge/", false, null);
expect(docID1).toStrictEqual({

@@ -147,3 +158,3 @@ arxiv: null,

const pdf3 = "Emerging-MPEG-Standards-for-Point-Cloud-Compression_doi_10_1109_JETCAS_2018_2885981.pdf";
const docID3 = yield (0, gen_1.getDocID)(pdf3, "/hoge/", false);
const docID3 = yield (0, gen_1.getDocID)(pdf3, "/hoge/", false, null);
expect(docID3).toStrictEqual({

@@ -156,3 +167,3 @@ arxiv: null,

const pdf10 = "[John C. Reynolds] Separation Logic A Logic for Shared Mutable Data Structures_doi_10_1109_LICS_2002_1029817.pdf";
const docID10 = yield (0, gen_1.getDocID)(pdf10, "/hoge/", false);
const docID10 = yield (0, gen_1.getDocID)(pdf10, "/hoge/", false, null);
expect(docID10).toStrictEqual({

@@ -167,3 +178,3 @@ arxiv: null,

const pdf6 = "MultistageProgramming/[Oleg Kiselyov] The Design and Implementation of BER MetaOCaml_doi_10_1007_978-3-319-07151-0_6.pdf";
const docID6 = yield (0, gen_1.getDocID)(pdf6, "/hoge/", false);
const docID6 = yield (0, gen_1.getDocID)(pdf6, "/hoge/", false, null);
expect(docID6).toStrictEqual({

@@ -176,3 +187,3 @@ arxiv: null,

const pdf11 = "[Paul Blain Levy] Call By Push Value_doi_10_1007_978-94-007-0954-6.pdf";
const docID11 = yield (0, gen_1.getDocID)(pdf11, "/hoge/", false);
const docID11 = yield (0, gen_1.getDocID)(pdf11, "/hoge/", false, null);
expect(docID11).toStrictEqual({

@@ -187,3 +198,3 @@ arxiv: null,

const pdf8 = "lonelyplanet-china-15-full-book.pdf";
const docID8 = yield (0, gen_1.getDocID)(pdf8, "/hoge/", false);
const docID8 = yield (0, gen_1.getDocID)(pdf8, "/hoge/", false, null);
expect(docID8).toStrictEqual({

@@ -190,0 +201,0 @@ arxiv: null,

38

dist/server.js

@@ -26,2 +26,3 @@ "use strict";

const logger_1 = require("./logger");
const constants_1 = require("./constants");
function checkEntry(entry) {

@@ -169,3 +170,3 @@ console.assert(entry.title != null && entry.path != null, "id = ", entry.id, "entry = ", JSON.stringify(entry, null, 2));

app.get("/api/get_db", (request, response) => {
logger_1.logger.info("Get a get_db request", request.url);
logger_1.logger.info("Get a get_db request" + request.url);
const json = JSON.parse(fs_1.default.readFileSync(db_path).toString());

@@ -230,3 +231,3 @@ let db_response = [];

tags.push(date_tag);
json = yield (0, gen_1.registerNonBookPDF)(path_1.default.dirname(db_path), filename, json, req.comments, tags, true);
json = yield (0, gen_1.registerNonBookPDF)(path_1.default.dirname(db_path), filename, json, req.comments, tags, true, req.url);
fs_1.default.writeFileSync(db_path, JSON.stringify(json));

@@ -269,2 +270,35 @@ response.writeHead(200, {

});
app.delete("/api/delete_entry", jsonParser, (request, response) => {
logger_1.logger.info("Get a delete_entry request url = " + request.url);
const entry_o = request.body;
if (entry_o["id"] != undefined) {
const entry = entry_o;
let json = JSON.parse(fs_1.default.readFileSync(db_path).toString());
if (json[entry.id] != undefined &&
json[entry.id]["path"] != undefined) {
logger_1.logger.info("Delete " + json[entry.id]["path"]);
const old_filename = path_1.default.join(path_1.default.dirname(db_path), json[entry.id]["path"]);
const dir = path_1.default.dirname(old_filename);
const new_filename = path_1.default.join(dir, path_1.default.basename(old_filename, ".pdf") +
" " +
constants_1.JENDELEY_NO_TRACK +
".pdf");
logger_1.logger.info("Rename " + old_filename + " to " + new_filename);
fs_1.default.renameSync(old_filename, new_filename);
delete json[entry.id];
}
fs_1.default.writeFileSync(db_path, JSON.stringify(json));
}
else {
logger_1.logger.warn("Object from the client is not legitimated. entry_o = " +
JSON.stringify(entry_o));
}
response.writeHead(200, {
"Content-Type": "application/json",
"Access-Control-Allow-Origin": "*",
"Access-Control-Allow-Methods": "GET,PUT,POST,DELETE",
});
response.end();
logger_1.logger.info("Sent a response from delete_entry");
});
app.listen(port, () => {

@@ -271,0 +305,0 @@ logger_1.logger.info(`jendeley backend server is listening on port ${port}`);

14

package.json

@@ -6,3 +6,3 @@ {

},
"version": "0.0.6",
"version": "0.0.7",
"description": "",

@@ -16,5 +16,5 @@ "main": "index.js",

"test": "NODE_OPTIONS=--experimental-vm-modules jest",
"test_scan_test_pdfs": "npm run build && node --require source-map-support/register dist/index.js scan --papers_dir test_pdfs",
"scan_test_pdfs": "npm run build && node --require source-map-support/register dist/index.js scan --papers_dir test_pdfs",
"profile_scan_test_pdfs": "npm run build && node --require source-map-support/register --prof dist/index.js scan --papers_dir test_pdfs",
"scan_test_pdfs_and_launch": "npm run build && node --require source-map-support/register dist/index.js scan --papers_dir test_pdfs && node --require source-map-support/register dist/index.js launch --db test_pdfs/db.json",
"scan_test_pdfs_and_launch": "npm run build && node --require source-map-support/register dist/index.js scan --papers_dir test_pdfs && node --require source-map-support/register dist/index.js launch --db test_pdfs/jendeley_db.json",
"fix:prettier": "prettier --write src",

@@ -27,3 +27,3 @@ "check:prettier": "prettier --check src"

},
"keywords": [],
"keywords": ["JSON", "paper", "PDF", "React"],
"author": "",

@@ -34,3 +34,3 @@ "license": "ISC",

},
"homepage": "https://github.com/akawashiro/jendeley/jendeley-backend#readme",
"homepage": "https://github.com/akawashiro/jendeley/tree/main/jendeley-backend#readme",
"devDependencies": {

@@ -44,3 +44,4 @@ "@types/base-64": "^1.0.0",

"typescript": "^4.9.3",
"prettier": "2.8.0"
"prettier": "2.8.0",
"jest": "^29.3.1"
},

@@ -55,3 +56,2 @@ "dependencies": {

"got": "^12.5.3",
"jest": "^29.3.1",
"pdf-parse": "^1.1.1",

@@ -58,0 +58,0 @@ "pino": "^8.7.0",

2

README.md
# jendeley
`jendeley` is a JSON-based paper organizing software.
- `jendeley` is JSON-based. You can see and edit your database easily.
- `jendeley` can work locally. Your important database is owned only by you. Not cloud.
- `jendeley` is working locally. Your important database is owned only by you. Not cloud.
- `jendeley` is browser based. You can run it anywhere node.js runs.

@@ -6,0 +6,0 @@ 

built-frontend/static/js/main.e3d4e0cb.js
built-frontend/static/js/main.e3d4e0cb.js.LICENSE.txt
built-frontend/static/js/main.e3d4e0cb.js.map
built-frontend/index.html

Sorry, the diff of this file is not supported yet

dist/gen.js.map

Sorry, the diff of this file is not supported yet

dist/gen.test.js.map

Sorry, the diff of this file is not supported yet

dist/server.js.map

Sorry, the diff of this file is not supported yet

SocketSocket SOC 2 Logo

Product

  • Package Alerts
  • Integrations
  • Docs
  • Pricing
  • FAQ
  • Roadmap
  • Changelog

About

Packages

npm

Go

Maven

PyPI

Rubygems

Stay in touch

Get open source security insights delivered straight into your inbox.

  • Terms
  • Privacy
  • Security

Made with ⚡️ by Socket Inc