@gmod/bam - npm Package Versions

1.0.21 (2019-08-06)

• Add a fix for the small chunk unpacking re-seeking in the same bgzf block repeatedly (#35)

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1.0.20 (2019-06-06)

• Added a method for smaller chunk unpacking, by modifying the header parsing to return smaller chunks and the bgzf unzipping to respect chunk boundaries (#30)
• Use fileOffset as bam feature ID which previously was crc32 of the BAM buffer which consequently speeds up processing and allows exact duplicate features

1.0.19 (2019-05-30)

• Added lineCount and hasRefSeq functions to BamFile, each accepting a string seqName
• Fixed aborting on index retrieval code

1.0.18 (2019-05-01)

• Bump generic-filehandle to 1.0.9 to fix error with using native fetch (global fetch needed to be bound)
• Bump abortable-promise-cache to 1.0.1 version to fix error with using native fetch and abort signals

1.0.17 (2019-04-28)

• Fix wrong number of arguments being passed to the readRefSeqs file read() invocation resulting in bad range requests

1.0.16 (2019-04-28)

• Added indexCov algorithm to retrieve approximate coverage of the BAM inferred from the size of the BAI linear index bins
• Fixed abortSignal on read() calls
• Updated API to allow bamUrl/baiUrl/csiUrl

1.0.15 (2019-04-04)

• Added check for too large of chromosomes in the bai bins
• Added aborting support (thanks @rbuels)
• Refactored index file class

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1.0.14 (2019-01-04)

• Add hasRefSeq for CSI indexes

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1.0.13 (2018-12-25)

• Use ascii decoding for read names
• Fix error with large BAM headers with many refseqs

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1.0.12 (2018-11-25)

• Faster viewAsPairs operation

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