@jbrowse/core - npm Package Versions

2.7.1 (2023-10-18)

:rocket: Enhancement

• Other
  • #3986 Allow editing step size and window size of GC content adapter (@cmdcolin)
• core
  • #3982 Allow rendering semi-circles in the arc renderer + SVG rendering of arcs (@cmdcolin)
• __mocks__, core
  • #3981 Auto-create HTML links for URLs, and strip HTML tags where they can't be rendered (@cmdcolin)

:bug: Bug Fix

• Other
  • #3991 Remove some non-functioning options from top level menu in @jbrowse/react-app (@cmdcolin)
  • #3980 Downgrade electron 26->25 to fix screen blanking (@cmdcolin)
• core
  • #3971 Fix rendering multi-quantitative tracks when blank data is present (@cmdcolin)

Committers: 1

• Colin Diesh (@cmdcolin) Done in 1.65s.

yarn run v1.22.18 $ lerna-changelog --next-version 2.7.0

2.7.0 (2023-10-04)

:rocket: Enhancement

• Other
  • #3956 Make faceted track selector facet filters responsive to adjacent filter selections (@cmdcolin)
  • #3953 Report JSON parse error when failing to load JSON file on desktop (@cmdcolin)
  • #3951 Add jobs widget to jbrowse-web (@carolinebridge-oicr)
  • #3900 Make bookmarks persistent across sessions with local storage (@carolinebridge-oicr)
  • #3896 Upgrade oclif to v3 to avoid deprecation warnings (@garrettjstevens)
  • #3907 Change the config.json missing screen to an "It worked!" message (@cmdcolin)
  • #3901 Use shortened VCF feature description for some types of insertions and deletions (@cmdcolin)
  • #3840 Adds custom filtering option to alignments tracks (@carolinebridge-oicr)
  • #3832 Adds keyboard shortcuts for panning and zooming on a focused view (@carolinebridge-oicr)
• core
  • #3954 Add column resizing for jbrowse-desktop start screen recent sessions panel (@cmdcolin)
  • #3938 Adds code improvements to GridBookmarkWidget (@carolinebridge-oicr)
  • #3914 Swap out NPM color library for colord library (@cmdcolin)
• app-core, core, embedded-core
  • #3931 Add eslint-plugin-fast-refresh (@cmdcolin)
• app-core
  • #3916 Use theme.secondary.main instead of theme.secondary.light on focusedView (@cmdcolin)
• app-core, core, embedded-core, product-core, text-indexing, web-core
  • #3502 Update to react v18, mobx-react v9 (@cmdcolin)
  • #3885 Eject react-script config from jbrowse-web and jbrowse-desktop (@cmdcolin)
• app-core, core, web-core
  • #3831 Adds session model reference to view in focus (@carolinebridge-oicr)

:bug: Bug Fix

• app-core, core
  • #3959 Remove type any from return value of getContainingView, getSession (@cmdcolin)
• Other
  • #3946 Fix setting multiple hierarchical defaultCollapsed config options at initialization (@cmdcolin)
  • #3937 Fix dev mode error from LGV overview scalebar (@cmdcolin)
  • #3925 Reduce amount of canvas commands issued to the dotplot renderer (@cmdcolin)
  • #3924 Fix incorrect tick mark label on dotplot axes happening in some cases (@cmdcolin)
  • #3921 Fix hydration warning by only rendering the SvgFeature "selected feature" and "mouseover" client side (@cmdcolin)
  • #3910 Fix feature label offsets in SVG exports with main thread RPC (@cmdcolin)
  • #3905 Fix alignments track infinite loading when applying same "Color by" or "Sort by" setting twice (@cmdcolin)
  • #3904 Fix "Color by"->"Mapping quality" for CRAM files (@cmdcolin)
  • #3902 Fix ability to use plaintext bed in add-track CLI (@cmdcolin)
• core
  • #3929 Fix mouse getting out of sync while dragging resize handle (@cmdcolin)
  • #3912 Avoid undefined getConf on assembly.configuration safeReference (@cmdcolin)
  • #3887 Add forwardRef to wrapped re-exported lazy components (@garrettjstevens)
  • #3866 Fix calculation of width of "view container title" (@cmdcolin)
  • #3865 Strip alpha from colors for improved SVG export compatibility (@cmdcolin)

:memo: Documentation

• #3957 Add error handler example for embedded components (@cmdcolin)
• #3913 Add color scheme for pathogenicity for ClinVar config_demo track (@scottcain)
• #3881 Improve some of the extension point documentation (@cmdcolin)

:house: Internal

• app-core, core, embedded-core
  • #3931 Add eslint-plugin-fast-refresh (@cmdcolin)
• core
  • #3920 Remove some unused "renameReference" code in static/dynamic blocks (@cmdcolin)
• Other
  • #3882 Minor refactors and typescripting improvements (@cmdcolin)
• app-core, core, embedded-core, product-core, web-core
  • #3855 Replace shortid with vendored nanoid (@cmdcolin)

Committers: 4

• Caroline Bridge (@carolinebridge-oicr)
• Colin Diesh (@cmdcolin)
• Garrett Stevens (@garrettjstevens)
• Scott Cain (@scottcain) Done in 2.80s.

yarn run v1.22.18 $ lerna-changelog 2.6.3

:rocket: Enhancement

• Other
  • #3830 Refactors LGV synteny and pileup with shared mixins (@carolinebridge-oicr)
  • #3811 Add ability to show/hide all tracks in category (@cmdcolin)
• app-core
  • #3810 Add sorting and collapsing options to the hierarchical track selector (@cmdcolin)
  • #3827 Add check for document.activeElement == INPUT before undo/redo (@cmdcolin)

:bug: Bug Fix

• #3839 Fix bug where multi-quantitative tracks plotted incorrectly for some bigwigs with empty regions (@cmdcolin)
• #3837 Fix text layout in dotplots with long coordinate strings (@cmdcolin)
• #3825 Fix SVG export compatibility by removing rgba strings (@cmdcolin)
• #3814 Fix suspense fallback to track container for lazy loaded display components (@cmdcolin)
• #3808 Fix track ordering of hierarchical track selector to more closely match the config.json (@cmdcolin)
• #3806 Fix a bug on the BookmarkWidget mui data grid where labels were not saving (@carolinebridge-oicr)
• #3804 Fix version missing from about menu in @jbrowse/react-app (@cmdcolin)

:house: Internal

• #3818 Miscellaneous plugin store code refactoring (@cmdcolin)

Committers: 3

• Caroline Bridge (@carolinebridge-oicr)
• Colin Diesh (@cmdcolin)
• Robert Buels (@rbuels) Done in 1.50s.

yarn run v1.22.18 $ lerna-changelog 2.6.2

:rocket: Enhancement

• #3796 Allow workers to load CJS plugins (@garrettjstevens)
• #3783 Add ability for track selector button in synteny view to select individual views (@cmdcolin)
• #3452 Use notarytool for macOS desktop signing (@cmdcolin)
• #3766 Add nextjs circular genome view demo (@cmdcolin)

:bug: Bug Fix

• Other
  • #3798 Fix VCF feature starting at 1-based 1 (@cmdcolin)
  • #3775 Fix stranded RNA-seq rendering and rename option Color by -> "First-of-pair strand" (@cmdcolin)
  • #3758 Adds safety checks on AlignmentsDisplay properties to avoid undefined rendering (@carolinebridge-oicr)
  • #3770 Fix potential issue with display searchFeatureByID being undefined (@cmdcolin)
• core
  • #3784 Fix synteny rubberband tooltips when views are exactly the same (@cmdcolin)
  • #3782 Fix crash on color picker component using debounce on color property (@carolinebridge-oicr)
  • #3767 Check session tracks for text search adapters (@garrettjstevens)
• app-core, core, embedded-core, product-core, text-indexing, web-core
  • #3771 Use inlineSourceMaps for tsc builds and other misc changes (@cmdcolin)

:house: Internal

• Other
  • #3794 Move embedded demos to individual repos (@cmdcolin)
• core, product-core
  • #3786 Centralize rpcWorker in product-core (@cmdcolin)

Committers: 3

• Caroline Bridge (@carolinebridge-oicr)
• Colin Diesh (@cmdcolin)
• Garrett Stevens (@garrettjstevens) Done in 1.55s.

yarn run v1.22.18 $ lerna-changelog 2.6.1

:rocket: Enhancement

• Other
  • #3743 Create mixin for shared code between LinearWiggleDisplay and MultiWiggleLinearDisplay (@cmdcolin)
  • #3711 Allow synteny data adapters to open files larger than 512Mb (@cmdcolin)
  • #3639 Add button to bookmark in jbrowse-web share dialog (@cmdcolin)
  • #3631 Add BEDPE add track workflow, avoid showing "Add track" when disabled (@carolinebridge-oicr)
  • #3700 Render alignment track arcs instantly after bpPerPx change (@cmdcolin)
  • #3695 Reduce re-drawing on alignments track paired read arcs/cloud display types (@cmdcolin)
• core
  • #3725 Filter tracks that match all view.assemblyNames in multi-assembly track selector modes (@cmdcolin)
  • #3531 Add @jbrowse/react-app embedded component (@cmdcolin)
  • #3653 Evaluate extension point on track config pre-process snapshot (@cmdcolin)
  • #3706 Miscellaneous alignments arc/cloud fixes (@cmdcolin)
  • #3698 Add column resizers to the variant ANN/CSQ panels (@cmdcolin)
• app-core, product-core, web-core
  • #3531 Add @jbrowse/react-app embedded component (@cmdcolin)
• __mocks__
  • #3707 Improved read cloud display for long reads with inversions (@cmdcolin)

:bug: Bug Fix

• core
  • #3749 Avoid re-prompting a user login when refresh token is processed (@cmdcolin)
  • #3572 Add OAuth and HTTP BasicAuth servers for local testing, fix some OAuth flows (@garrettjstevens)
  • #3708 Add removable-media to jbrowse desktop snap (@cmdcolin)
  • #3687 Take into account ML tag when showing MM tag on alignments, misc refactoring (@cmdcolin)
• Other
  • #3747 Fix blank lines in GFF crashing text-index (@cmdcolin)
  • #3739 Fix specifying the assemblyNames config slot on add-connection CLI (@cmdcolin)
  • #3631 Add BEDPE add track workflow, avoid showing "Add track" when disabled (@carolinebridge-oicr)
  • #3667 Fix horizontal flip functionality for Hi-C display (@studentshivang)
  • #3703 Fix rendering error in alignments tracks when filtering by tag in CRAM file (@Lilas-w)
  • #3694 Fix ability to filter certain fields in BAM/CRAM files (@cmdcolin)
  • #3691 Fix breakpoint split view alignment connections not pointing at right position in v2.5.0 (@cmdcolin)
  • #3686 Fix jbrowse create/jbrowse upgrade CLI intermittent failures (@cmdcolin)
• product-core, web-core
  • #3738 Don't throw on UCSC connection containing assemblies not matching connection->assemblyNames config (@cmdcolin)
• app-core, core, embedded-core
  • #3731 Fix view menu going off screen in some cases (@cmdcolin)
• app-core
  • #3713 Fix centering of the ImportForm on SV inspector (@cmdcolin)

:memo: Documentation

• Other
  • #3752 Add storybook example for fetching features currently in view (@cmdcolin)
  • #3732 Add JBrowse R shiny app demo (@carolinebridge-oicr)
  • #3693 Remove package table from release blogposts (@cmdcolin)
• core, embedded-core, product-core
  • #3704 Organize autogenerated docs into categories (@cmdcolin)

:house: Internal

• app-core, core, product-core, text-indexing
  • #3740 Bump electron, proxy-agent, fontsource-roboto, etc. and update SnackbarMessage from typed array to object (@cmdcolin)
• core
  • #3741 Distinguish between SessionWithConnections and SessionWithConnectionEditing (@cmdcolin)
• Other
  • #3734 PileupRenderer refactor (@cmdcolin)
• app-core, core, product-core, web-core
  • #3717 More modularizing of shared app code (@cmdcolin)
• product-core
  • #3709 Silence console warn in CopyAndDelete test (@cmdcolin)
• app-core, core, embedded-core, product-core, text-indexing
  • #3701 Create app-core and embedded-core packages (@cmdcolin)
• core, product-core
  • #3661 Create packages/product-core containing shared code between the various products (@rbuels)

Committers: 6

• Caroline Bridge (@carolinebridge-oicr)
• Colin Diesh (@cmdcolin)
• Garrett Stevens (@garrettjstevens)
• Robert Buels (@rbuels)
• Shivang Dwivedi (@studentshivang)
• @Lilas-w Done in 2.84s.

2.5.0 (2023-05-04)

<details><summary>Packages in this release</summary> <p>

| Package | Download | | --------------------------------------- | ----------------------------------------------------------------- | | @jbrowse/core | https://www.npmjs.com/package/@jbrowse/core | | @jbrowse/plugin-alignments | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | @jbrowse/plugin-arc | | | @jbrowse/plugin-circular-view | https://www.npmjs.com/package/@jbrowse/plugin-circular-view | | @jbrowse/plugin-config | https://www.npmjs.com/package/@jbrowse/plugin-config | | @jbrowse/plugin-data-management | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | @jbrowse/plugin-dotplot-view | | | @jbrowse/plugin-grid-bookmark | https://www.npmjs.com/package/@jbrowse/plugin-grid-bookmark | | @jbrowse/plugin-gtf | https://www.npmjs.com/package/@jbrowse/plugin-gtf | | @jbrowse/plugin-hic | | | @jbrowse/plugin-legacy-jbrowse | https://www.npmjs.com/package/@jbrowse/plugin-legacy-jbrowse | | @jbrowse/plugin-linear-comparative-view | | | @jbrowse/plugin-linear-genome-view | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | @jbrowse/plugin-lollipop | | | @jbrowse/plugin-rdf | | | @jbrowse/plugin-sequence | https://www.npmjs.com/package/@jbrowse/plugin-sequence | | @jbrowse/plugin-spreadsheet-view | | | @jbrowse/plugin-trix | https://www.npmjs.com/package/@jbrowse/plugin-trix | | @jbrowse/plugin-variants | https://www.npmjs.com/package/@jbrowse/plugin-variants | | @jbrowse/plugin-wiggle | https://www.npmjs.com/package/@jbrowse/plugin-wiggle | | @jbrowse/cli | https://www.npmjs.com/package/@jbrowse/cli | | @jbrowse/desktop | | | @jbrowse/img | https://www.npmjs.com/package/@jbrowse/img | | @jbrowse/react-circular-genome-view | https://www.npmjs.com/package/@jbrowse/react-circular-genome-view | | @jbrowse/react-linear-genome-view | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | @jbrowse/web | |

</p> </details>

:rocket: Enhancement

• Other
  • #3675 Use react-popper for tooltips in DotplotView (@cmdcolin)
  • #3637 Fix renderDelay not being applied to dynamicBlocks (@cmdcolin)
• core
  • #3677 Adjust RefNameAutocomplete width calculation to avoid ellipses (@cmdcolin)
  • #3660 Bump x-data-grid dependency, refactors for BaseFeatureDetails, add GridToolbar (@cmdcolin)
  • #3626 Update to mui x-data-grid 6 (@cmdcolin)

:bug: Bug Fix

• core
  • #3681 Guard against undefined in CoreGetFeatureDetails (@cmdcolin)
  • #3662 Fix empty feature sequence on top-level gene feature (@cmdcolin)
  • #3666 Fix text boxes being too small in Dialog boxes (@cmdcolin)
  • #3642 Fix error handling of feature detail formatter jexl callbacks (@cmdcolin)
  • #3621 Update plugin rollup polyfill package (@garrettjstevens)
  • #3620 Fix potential crashes where alignment SEQ field may be empty, simplify some display model code (@cmdcolin)
• Other
  • #3670 Only double-click zoom if not clicking on feature (@cmdcolin)
  • #3652 Fix text being invisible on overview scalebar when cytobands shown (@cmdcolin)
  • #3632 Fix mouse click-and-drag behavior in the alternative "cursor mode" for the dotplot view (@cmdcolin)
  • #3625 Fix UCSC trackhub assembly aliases matching (@andrzejgrzelak)
• __mocks__, core
  • #3630 Fix flakiness of connection test (@cmdcolin)

:memo: Documentation

• Other
  • #3676 Refactor circular genome view storybook (@cmdcolin)
  • #3671 Fix website documentation sidebar on browsers with prefers-reduced-motion (@cmdcolin)
  • #3654 Add some docs for configuring defaultSession (@cmdcolin)
• core
  • #3646 Refactor linear genome view storybook (@cmdcolin)

:house: Internal

• core
  • #3647 Refactoring navToMultiple, navToLocString, and related (@cmdcolin)
  • #3629 Typescript checking for config slot names (@rbuels)
  • #3618 Rename APIs for feature density stats and quantitative stats (@cmdcolin)
  • #3615 Add check for default export to plugin loader (@rbuels)

Committers: 4

• Colin Diesh (@cmdcolin)
• Garrett Stevens (@garrettjstevens)
• Robert Buels (@rbuels)
• @andrzejgrzelak

2.4.2 (2023-03-27)

<details><summary>Packages in this release</summary> <p>

| Package | Download | | --------------------------------------- | ----------------------------------------------------------------- | | @jbrowse/core | https://www.npmjs.com/package/@jbrowse/core | | @jbrowse/plugin-alignments | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | @jbrowse/plugin-arc | | | @jbrowse/plugin-config | https://www.npmjs.com/package/@jbrowse/plugin-config | | @jbrowse/plugin-data-management | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | @jbrowse/plugin-hic | | | @jbrowse/plugin-linear-comparative-view | | | @jbrowse/plugin-linear-genome-view | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | @jbrowse/plugin-lollipop | | | @jbrowse/plugin-sequence | https://www.npmjs.com/package/@jbrowse/plugin-sequence | | @jbrowse/plugin-spreadsheet-view | | | @jbrowse/plugin-svg | https://www.npmjs.com/package/@jbrowse/plugin-svg | | @jbrowse/plugin-trix | https://www.npmjs.com/package/@jbrowse/plugin-trix | | @jbrowse/plugin-variants | https://www.npmjs.com/package/@jbrowse/plugin-variants | | @jbrowse/cli | https://www.npmjs.com/package/@jbrowse/cli | | @jbrowse/desktop | | | @jbrowse/img | https://www.npmjs.com/package/@jbrowse/img | | @jbrowse/react-circular-genome-view | https://www.npmjs.com/package/@jbrowse/react-circular-genome-view | | @jbrowse/react-linear-genome-view | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | @jbrowse/web | |

</p> </details>

:rocket: Enhancement

• core
  • #3604 Alignments tags description in feature details on mouseover (@cmdcolin)
• Other
  • #3586 Add authorization(internetAccount) support for Trix index files (@andrzejgrzelak)

:bug: Bug Fix

• Other
  • #3610 Avoid cutting off import form of spreadsheet view, fix overflowed text in table header (@cmdcolin)
  • #3600 Fix using the force load button after a stats timeout (@cmdcolin)
  • #3592 Fix shading on synteny features after mouseout (@cmdcolin)
• __mocks__, core
  • #3608 Fix subfeatures formatter not being applied to feature detail panel (@cmdcolin)
  • #3607 Avoid "ResizeObserver" loop warning during development (@cmdcolin)
• core
  • #3593 Fix gene without subfeatures not being displayed in sequence feature details (@cmdcolin)

:house: Internal

• #3611 Use local data instead of remote data for LGV component test (@cmdcolin)

Committers: 2

• Colin Diesh (@cmdcolin)
• @andrzejgrzelak

2.4.1 (2023-03-14)

<details><summary>Packages in this release</summary> <p>

| Package | Download | | --------------------------------------- | ----------------------------------------------------------------- | | @jbrowse/core | https://www.npmjs.com/package/@jbrowse/core | | @jbrowse/text-indexing | | | @jbrowse/plugin-alignments | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | @jbrowse/plugin-authentication | https://www.npmjs.com/package/@jbrowse/plugin-authentication | | @jbrowse/plugin-bed | https://www.npmjs.com/package/@jbrowse/plugin-bed | | @jbrowse/plugin-breakpoint-split-view | | | @jbrowse/plugin-circular-view | https://www.npmjs.com/package/@jbrowse/plugin-circular-view | | @jbrowse/plugin-comparative-adapters | | | @jbrowse/plugin-config | https://www.npmjs.com/package/@jbrowse/plugin-config | | @jbrowse/plugin-data-management | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | @jbrowse/plugin-dotplot-view | | | @jbrowse/plugin-gff3 | https://www.npmjs.com/package/@jbrowse/plugin-gff3 | | @jbrowse/plugin-grid-bookmark | https://www.npmjs.com/package/@jbrowse/plugin-grid-bookmark | | @jbrowse/plugin-gtf | https://www.npmjs.com/package/@jbrowse/plugin-gtf | | @jbrowse/plugin-hic | | | @jbrowse/plugin-jobs-management | | | @jbrowse/plugin-legacy-jbrowse | https://www.npmjs.com/package/@jbrowse/plugin-legacy-jbrowse | | @jbrowse/plugin-linear-comparative-view | | | @jbrowse/plugin-linear-genome-view | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | @jbrowse/plugin-lollipop | | | @jbrowse/plugin-menus | | | @jbrowse/plugin-sequence | https://www.npmjs.com/package/@jbrowse/plugin-sequence | | @jbrowse/plugin-spreadsheet-view | | | @jbrowse/plugin-sv-inspector | | | @jbrowse/plugin-svg | https://www.npmjs.com/package/@jbrowse/plugin-svg | | @jbrowse/plugin-text-indexing | | | @jbrowse/plugin-trix | https://www.npmjs.com/package/@jbrowse/plugin-trix | | @jbrowse/plugin-variants | https://www.npmjs.com/package/@jbrowse/plugin-variants | | @jbrowse/plugin-wiggle | https://www.npmjs.com/package/@jbrowse/plugin-wiggle | | @jbrowse/cli | https://www.npmjs.com/package/@jbrowse/cli | | @jbrowse/desktop | | | @jbrowse/img | https://www.npmjs.com/package/@jbrowse/img | | @jbrowse/react-circular-genome-view | https://www.npmjs.com/package/@jbrowse/react-circular-genome-view | | @jbrowse/react-linear-genome-view | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | @jbrowse/web | |

</p> </details>

:rocket: Enhancement

• core
  • #3534 Improve visibility of SNPs on alignments track (@cmdcolin)
  • #3561 Add scroll zoom, d-pad, and more click+drag options to dotplot (@cmdcolin)
• Other
  • #3574 Add ability to load all built-in synteny data sources from @jbrowse/cli (@cmdcolin)
  • #3564 Use double-click to zoom in on particular offset in LGV, and make ctrl+scroll also zoom in on particular offset (@cmdcolin)

:bug: Bug Fix

• #3578 Fix selected synteny feature getting unselected after scroll (@cmdcolin)
• #3566 Fix use of "show all regions with data" feature in SV inspector with TRA entries (with CHR2 from INFO) (@cmdcolin)
• #3558 Fix visual effect from using the overview scalebar click and dragging backwards (@cmdcolin)
• #3556 Fix infinite loading state when no synteny features are visible in synteny view (@cmdcolin)
• #3551 Fix bad layout on tabix tracks that have Unicode characters (@cmdcolin)
• #3548 Fix upper case querying of jbrowse 1 text search store (@cmdcolin)
• #3545 Fix issue where clearing search box on LGV import form turns search box into loading bar (@cmdcolin)

:memo: Documentation

• #3571 Fixing link to PAG 2023 tutorial (@scottcain)

:house: Internal

• Other
  • #3567 Update github actions workflows to newer versions (@cmdcolin)
• __mocks__, core, text-indexing
  • #3557 Add additional lint rules from typescript-eslint and eslint-plugin-unicorn (@cmdcolin)

Committers: 2

• Colin Diesh (@cmdcolin)
• Scott Cain (@scottcain)

2.4.0 (2023-02-24)

<details><summary>Packages in this release</summary> <p>

| Package | Download | | --------------------------------------- | ----------------------------------------------------------------- | | @jbrowse/core | https://www.npmjs.com/package/@jbrowse/core | | @jbrowse/plugin-alignments | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | @jbrowse/plugin-authentication | https://www.npmjs.com/package/@jbrowse/plugin-authentication | | @jbrowse/plugin-breakpoint-split-view | | | @jbrowse/plugin-circular-view | https://www.npmjs.com/package/@jbrowse/plugin-circular-view | | @jbrowse/plugin-config | https://www.npmjs.com/package/@jbrowse/plugin-config | | @jbrowse/plugin-data-management | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | @jbrowse/plugin-dotplot-view | | | @jbrowse/plugin-grid-bookmark | https://www.npmjs.com/package/@jbrowse/plugin-grid-bookmark | | @jbrowse/plugin-gtf | https://www.npmjs.com/package/@jbrowse/plugin-gtf | | @jbrowse/plugin-hic | | | @jbrowse/plugin-jobs-management | | | @jbrowse/plugin-legacy-jbrowse | https://www.npmjs.com/package/@jbrowse/plugin-legacy-jbrowse | | @jbrowse/plugin-linear-comparative-view | | | @jbrowse/plugin-linear-genome-view | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | @jbrowse/plugin-menus | | | @jbrowse/plugin-sequence | https://www.npmjs.com/package/@jbrowse/plugin-sequence | | @jbrowse/plugin-spreadsheet-view | | | @jbrowse/plugin-sv-inspector | | | @jbrowse/plugin-svg | https://www.npmjs.com/package/@jbrowse/plugin-svg | | @jbrowse/plugin-variants | https://www.npmjs.com/package/@jbrowse/plugin-variants | | @jbrowse/plugin-wiggle | https://www.npmjs.com/package/@jbrowse/plugin-wiggle | | @jbrowse/cli | https://www.npmjs.com/package/@jbrowse/cli | | @jbrowse/desktop | | | @jbrowse/img | https://www.npmjs.com/package/@jbrowse/img | | @jbrowse/react-circular-genome-view | https://www.npmjs.com/package/@jbrowse/react-circular-genome-view | | @jbrowse/react-linear-genome-view | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | @jbrowse/web | |

</p> </details>

:rocket: Enhancement

• Other
  • #3527 Breakpoint split view SVG export (@cmdcolin)
  • #3510 Allow configuring default display height (@cmdcolin)
• core
  • #3513 Add ability to open refNameAliases+cytobands in "Open sequence" start screen on desktop (@cmdcolin)
  • #3512 SVG export of linear synteny view, dotplot, and circular views (@cmdcolin)
  • #3467 Create dark theme and allow user to toggle different themes from preferences dialog (@cmdcolin)

:bug: Bug Fix

• #3525 Fix missing grid ticks in dotplot (@cmdcolin)
• #3524 Fix loading session shares that have a plus sign in the sessionId (@cmdcolin)

:memo: Documentation

• #3532 Check website links in CI (@cmdcolin)
• #3507 Fix mygene.info demo track (@cmdcolin)

Committers: 2

• Colin Diesh (@cmdcolin)
• Garrett Stevens (@garrettjstevens)