@jbrowse/plugin-bed

JBrowse 2 bed adapters, tracks, etc.

1.0.1
Source
npm

Version published: 4 years ago

Weekly downloads: 442; decreased by-33.83%

Maintainers: 6

Weekly downloads

Created: 4 years ago

The README file is missing

v1.0.1 (2020-11-25)

<details><summary>Packages in this release</summary> <p>

| Package | --------------------------------------- | @jbrowse/core | @jbrowse/development-tools | @jbrowse/plugin-alignments | @jbrowse/plugin-bed | @jbrowse/plugin-breakpoint-split-view | @jbrowse/plugin-circular-view | @jbrowse/plugin-config | @jbrowse/plugin-data-management | @jbrowse/plugin-dotplot-view | @jbrowse/plugin-filtering | @jbrowse/plugin-gff3 | @jbrowse/plugin-hic | @jbrowse/plugin-legacy-jbrowse | @jbrowse/plugin-linear-comparative-view | @jbrowse/plugin-linear-genome-view | @jbrowse/plugin-lollipop | @jbrowse/plugin-menus | @jbrowse/plugin-protein | @jbrowse/plugin-rdf | @jbrowse/plugin-sequence | @jbrowse/plugin-spreadsheet-view | @jbrowse/plugin-sv-inspector | @jbrowse/plugin-svg | @jbrowse/plugin-trackhub-registry | @jbrowse/plugin-variants | @jbrowse/plugin-wiggle | @jbrowse/cli | @jbrowse/desktop | @jbrowse/protein-widget | @jbrowse/react-linear-genome-view | @jbrowse/web | Download | | ---------------------------------------------------------------- | | https://www.npmjs.com/package/@jbrowse/core | | https://www.npmjs.com/package/@jbrowse/development-tools | | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | https://www.npmjs.com/package/@jbrowse/plugin-bed | | | | | | https://www.npmjs.com/package/@jbrowse/plugin-config | | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | | | | | https://www.npmjs.com/package/@jbrowse/plugin-gff3 | | | | | | | | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | | | | | | | | | https://www.npmjs.com/package/@jbrowse/plugin-sequence | | | | | | https://www.npmjs.com/package/@jbrowse/plugin-svg | | | | https://www.npmjs.com/package/@jbrowse/plugin-variants | | https://www.npmjs.com/package/@jbrowse/plugin-wiggle | | https://www.npmjs.com/package/@jbrowse/cli | | | | | | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | |

</p> </details>

:rocket: Enhancement

Other
- #1462 Allow importing gzip and bgzip files in the spreadsheet and SV inspector (@cmdcolin)
- #1460 Add support for more bigBed subtypes and fallback for unsupported types (@peterkxie)
- #1455 Add the ability to use connection across refreshes in jbrowse-web using session connections (@peterkxie)
- #1439 1381 improve assembly add form (@elliothershberg)
- #1433 Make add track warning a bit more lenient (@garrettjstevens)
- #1420 Add the assembly manager feature to jbrowse-desktop (@elliothershberg)
core
- #1458 Add three frame translation to the sequence track (@cmdcolin)
- #1453 Change "Factory reset" to "Reset session" in jbrowse-web (@teresam856)
- #1441 New icon for the track selector (@cmdcolin)
- #1438 Improve assembly loading time by moving to main thread (@cmdcolin)
- #1434 Create separate config schema for ReferenceSequenceTrack (@elliothershberg)

:bug: Bug Fix

core
- #1491 Fix ability to add a PAF synteny track with add-track (@cmdcolin)
- #1470 Avoid rendering the literal string 'null' in the feature details (@cmdcolin)
Other
- #1489 Fix long read vs ref CIGAR rendering for horizontally flipped synteny view (@cmdcolin)
- #1460 Add support for more bigBed subtypes and fallback for unsupported types (@peterkxie)
- #1472 Wait on assemblies that are being tracked by the assemblyManager only (@cmdcolin)
- #1466 Avoid rendering the display and renderer settings in the about this track dialog (@cmdcolin)
- #1461 Fix usage of jbrowse-cli on node 10.9 related to fs.promises (@cmdcolin)
- #1452 Bug: search box disappears from LGV header on smaller widths (@teresam856)
- #1432 Make global variables window.JBrowseSession and window.JBrowseRootModel available in jbrowse-web (@teresam856)
- #1431 Fix connection tracks not showing up in track selector (@garrettjstevens)
- #1428 Fix the listVersions behavior of the jbrowse-cli returning duplicate entries (@cmdcolin)
- #1422 Fix crash from empty ALT field in VCF (@cmdcolin)
- #1413 Fix ability to add CRAM tracks using the web based add-track GUI (@cmdcolin)

:memo: Documentation

#1435 Updates to quickstart guides (@garrettjstevens)

:house: Internal

Other
- #1437 Use lerna-changelog for changelog generation (@cmdcolin)
- #1465 Establish minimum node version of 10.4 for using jbrowse-cli tools (@cmdcolin)
- #1454 Fix GH workflow build (@elliothershberg)
- #1448 Move building and testing from Travis to GitHub Workflow (@garrettjstevens)
- #1450 Fix website build (@garrettjstevens)
core
- #1468 Have assembly manager get plugin manager from factory function args (@garrettjstevens)

Committers: 5

Colin Diesh (@cmdcolin)
Elliot Hershberg (@elliothershberg)
Garrett Stevens (@garrettjstevens)
Teresa Martinez (@teresam856)
@peterkxie

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Package last updated on 25 Nov 2020

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