Brain imAgiNg Analysis iN Arcana (Banana): brain imaging analysis workflows implemented in the Arcana framework (arcana.readthedocs.io)
.. image:: https://img.shields.io/pypi/pyversions/banana.svg :target: https://pypi.python.org/pypi/banana/ :alt: Supported Python versions .. image:: https://img.shields.io/pypi/v/banana.svg :target: https://pypi.python.org/pypi/banana/ :alt: Latest Version
Brain imAgiNg Analysis iN Arcana (Banana): a collection of brain imaging analysis workflows implemented in the Arcana_ framework, which can be used to analyse analysis datasets stored in XNAT, BIDS or plain-directory repositories.
Banana and its dependencies can be installed from PyPI with::
$ pip3 install banana
Pipelines
Depending on which pipelines you need to run, you may need to install some or
all of the following tools. Note that MRtrix3 and Dcm2niix are used for implicit
format conversions so are typically required.
* MRtrix3 (https://github.com/MRtrix3/mrtrix3)
* Dcm2niix (https://github.com/rordenlab/dcm2niix)
* FSL (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/)
* Matlab (https://au.mathworks.com/products/matlab.html)
* SPM (http://www.fil.ion.ucl.ac.uk/spm/software/spm12/)
* ANTs (https://sourceforge.net/projects/advants/)
* Freesurfer (https://surfer.nmr.mgh.harvard.edu)
* AFNI (https://afni.nimh.nih.gov)
.. _Arcana: http://arcana.readthedocs.io
FAQs
Brain imAgiNg Analysis iN Arcana (Banana): brain imaging analysis workflows implemented in the Arcana framework (arcana.readthedocs.io)
We found that banana demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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