[!WARNING]
A paper is in preparation about this work. If you consider to use this tool, please contact the author for attribution.
This Python library aims to be an abstraction layer for GFA file format.
[!WARNING]
The old version ofgfagraphshas been deprecated (since v0.3.0), in favour ofpgGraphs. UsinggfagraphsorpgGraphsto import resolves now in using the same library. In a near future,pgGraphsnamespace will be deprecated.
pgGraphs/gfagraphs
The package is organized in 4 modules:
gfagraphs.abstractions contains abstractions over GFA formatsgfagraphs.gfaparser contains an abstract class for parsing and saving GFA file formatgfagraphs.graph contains the main Graph class that represents a GFA graph in memory, and edit functionsgfagraphs.networkx conains an abstract class for visualization and modelization of GFA in a NetworkX object[!NOTE]
Want to contribute? Feel free to open a PR on an issue about a missing, buggy or incomplete feature!
FAQs
Library to parse, edit and handle in memory GFA graphs
We found that gfagraphs demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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