kyutils

kyutils

kyu's utils

examples

• behavior
  • given the extracted DIO dat files from a SpikeGadgets rec file, plots the time course of the animal's decisions in the W-track task and indicates rewarded trials
  • plots place field
• nwb
  • basic NWB conversion of ephys data
• probe
  • probeinterface.Probe objects for the 15um and 20um versions of the Livermore polymer probes
• spikegadgets
  • generates a trodesconf file based on a list of Livermore probe types; e.g. if implanting three Livermore probes (one 15um type and two 20um type) in alternating order, can pass the list [20, 15, 20] and will generate a trodesconf file with the contacts arranged geometrically
  • generate a trodesconf file given the number of channels; good for reconfiguring
  • parses the header of a SpikeGadgets rec file
• spikesorting
  • plots spike waveform in probe geometry
  • computes standard metrisc for frank lab
  • generates figurl

installation

pip install kyutils

for the version that creates figurls, do pip install "kyutils[figurl]" and set up kachery-cloud.