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smriprep-docker

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smriprep-docker

A wrapper for generating Docker commands using regular sMRIPrep syntax

  • 0.16.1
  • PyPI
  • Socket score

Maintainers
4

The sMRIPrep on Docker wrapper

sMRIprep is a structural magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

This is a lightweight Python wrapper to run sMRIPrep. It generates the appropriate Docker commands, providing an intuitive interface to running the sMRIPrep workflow in a Docker environment. Docker must be installed and running. This can be checked running ::

docker info

Please report any feedback to our GitHub repository <https://github.com/nipreps/smriprep>_ and do not forget to credit <https://smriprep.readthedocs.io/en/latest/citing.html>_ all the authors of software that sMRIPrep uses.

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