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@gmod/bam

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@gmod/bam - npm Package Versions

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1.0.37

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cmdcolin

published 1.0.37 • 5 years ago

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1.0.37 (2020-06-06)

Typescript only release: export BamRecord types

1.0.36

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cmdcolin

published 1.0.36 • 5 years ago

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1.0.36 (2020-03-05)

Adds a shortcut to stop parsing chunks after a record is detected to be outside the requested range while decoding

1.0.35

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cmdcolin

published 1.0.35 • 5 years ago

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1.0.35 (2020-02-04)

Update scheme used to calculate unique fileOffset based IDs using @gmod/bgzf-filehandle updates

1.0.34

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cmdcolin

published 1.0.34 • 5 years ago

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1.0.34 (2020-01-24)

Small fix for using id() instead of .get('id') for weird SAM records containing ID field

1.0.33

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cmdcolin

published 1.0.33 • 5 years ago

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1.0.33 (2020-01-24)

Perform decoding of entire chunk up front to aid caching, reverts change in 1.0.29

1.0.32

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cmdcolin

published 1.0.32 • 5 years ago

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1.0.32 (2019-11-16)

Add a speed improvement for long reads by pre-allocating sequence/quality scores array

1.0.31

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cmdcolin

published 1.0.31 • 5 years ago

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1.0.31 (2019-11-07)

Fix example of the "ID" field failing to return the right data

1.0.30

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cmdcolin

published 1.0.30 • 5 years ago

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1.0.30 (2019-11-07)

Add fix that was causing the parser to not return all tags from the _tags API

1.0.29

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cmdcolin

published 1.0.29 • 5 years ago

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1.0.29 (2019-10-31)

Decoding of the BAM records at time of use instead of entire chunk decoded up front
Alternate chunk merging strategy inspired by igv.js code

1.0.28

Diff

cmdcolin

published 1.0.28 • 5 years ago

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1.0.28 (2019-10-29)

Add CSI index block merging
Change unique ID generator to be smaller numeric IDs

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