@jbrowse/core

jbrowse-core

Core JBrowse libraries used by most JBrowse plugins.

Documentation

See docs

Academic Use

This package was written with funding from the NHGRI as part of the JBrowse project. If you use it in an academic project that you publish, please cite the most recent JBrowse paper, which will be linked from jbrowse.org.

License

Apache-2.0 © Evolutionary Software Foundation

Changelog

1.6.8 (2022-03-25)

<details><summary>Packages in this release</summary> <p>

| Package | Download | | ------------------------------------- | ----------------------------------------------------------------- | | @jbrowse/core | https://www.npmjs.com/package/@jbrowse/core | | @jbrowse/plugin-alignments | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | @jbrowse/plugin-breakpoint-split-view | | | @jbrowse/plugin-data-management | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | @jbrowse/plugin-linear-genome-view | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | @jbrowse/plugin-sequence | https://www.npmjs.com/package/@jbrowse/plugin-sequence | | @jbrowse/plugin-svg | https://www.npmjs.com/package/@jbrowse/plugin-svg | | @jbrowse/plugin-wiggle | https://www.npmjs.com/package/@jbrowse/plugin-wiggle | | @jbrowse/desktop | | | @jbrowse/img | https://www.npmjs.com/package/@jbrowse/img | | @jbrowse/react-circular-genome-view | https://www.npmjs.com/package/@jbrowse/react-circular-genome-view | | @jbrowse/react-linear-genome-view | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | @jbrowse/web | |

</p> </details>

:rocket: Enhancement

• Other
  • #2847 Add option to color all the letters on all the reads to the pileup renderer (@cmdcolin)
  • #2849 Avoid drawing intron subfeatures for gene glyphs (@cmdcolin)
  • #2835 Hide add track and connection menu items when using embedded component (@carolinebridge-oicr)
  • #2836 Display low-quality modifications in SNPCoverage renderer for MM tag (@cmdcolin)
• core
  • #2809 Optimizations for alignments tracks and BAM parsing (@cmdcolin)
  • #2828 Change calculation for number of webworkers for web/desktop (@cmdcolin)
  • #2829 Allow user to specify number of workers (@garrettjstevens)
  • #2775 New SVG gene glyph with directional arrows (@cmdcolin)

:bug: Bug Fix

• Other
  • #2852 Fix misaligned features under breakpoint split view (@cmdcolin)
  • #2844 Fix layout of small features without labels for SvgFeatureRenderer (@cmdcolin)
  • #2839 Fix the drawing of SNP height when the SNPCoverage track is using log scale (@cmdcolin)
  • #2825 Fix tracklabels positioning not updating in UI after user selection (@cmdcolin)
• core
  • #2841 Fix alignments tracks loading excessive data on chromosomes where no features exist (@cmdcolin)
  • #2829 Allow user to specify number of workers (@garrettjstevens)

Committers: 3

• Caroline Bridge (@carolinebridge-oicr)
• Colin Diesh (@cmdcolin)
• Garrett Stevens (@garrettjstevens)