Modules used throughout the tools developed and maintained by the Center for Genomic Epidemiology (CGE).
The cgecore module have been updated to version 2.0.0. Despite earlier announcements, we have decided to try and keep most of the legacy functionality in version 2. All CGE tools should work with this updated version. However, we did not have the resources to test it with all CGE tools. This version includes all functionality from the cgelib package version 0.7.5. The cgelib package has been deprecated and all functionality has been moved to the cgecore package. The cgecore package is now the one-stop core module for the Center for Genomic Epidemiology.
Please note that some parts of the added functionality is still in development and tests are far from complete.
Core module for the Center for Genomic Epidemiology
This module contains classes and functions needed to run the service wrappers and pipeline scripts
The pypi project can be found here: https://pypi.org/project/cgecore/
python2 setup.py install
python3 setup.py install
python3 setup.py sdist bdist_wheel
twine upload dist/*
deprecated:
python setup.py sdist upload -r pypi
FAQs
Modules used throughout the tools developed and maintained by the Center for Genomic Epidemiology (CGE).
We found that cgecore demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 3 open source maintainers collaborating on the project.
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