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The brain is the perfect place to look for inspiration to develop more efficient neural networks. One of the main differences with modern deep learning is that the brain encodes information in spikes rather than continuous activations. snnTorch is a Python package for performing gradient-based learning with spiking neural networks. It extends the capabilities of PyTorch, taking advantage of its GPU accelerated tensor computation and applying it to networks of spiking neurons. Pre-designed spiking neuron models are seamlessly integrated within the PyTorch framework and can be treated as recurrent activation units.
.. image:: https://github.com/jeshraghian/snntorch/blob/master/docs/_static/img/spike_excite_alpha_ps2.gif?raw=true :align: center :width: 800
If you like this project, please consider starring ⭐ this repo as it is the easiest and best way to support it.
If you have issues, comments, or are looking for advice on training spiking neural networks, you can open an issue, a discussion, or chat in our discord <https://discord.gg/cdZb5brajb>_ channel.
snnTorch Structure ^^^^^^^^^^^^^^^^^^^^^^^^ snnTorch contains the following components:
.. list-table:: :widths: 20 60 :header-rows: 1
snntorch <https://snntorch.readthedocs.io/en/latest/snntorch.html>_snntorch.export <https://snntorch.readthedocs.io/en/latest/snntorch.export.html>_NIR <https://nnir.readthedocs.io/en/latest/>_snntorch.functional <https://snntorch.readthedocs.io/en/latest/snntorch.functional.html>_snntorch.spikegen <https://snntorch.readthedocs.io/en/latest/snntorch.spikegen.html>_snntorch.spikeplot <https://snntorch.readthedocs.io/en/latest/snntorch.spikeplot.html>_snntorch.surrogate <https://snntorch.readthedocs.io/en/latest/snntorch.surrogate.html>_snntorch.utils <https://snntorch.readthedocs.io/en/latest/snntorch.utils.html>_snnTorch is designed to be intuitively used with PyTorch, as though each spiking neuron were simply another activation in a sequence of layers. It is therefore agnostic to fully-connected layers, convolutional layers, residual connections, etc.
At present, the neuron models are represented by recursive functions which removes the need to store membrane potential traces for all neurons in a system in order to calculate the gradient. The lean requirements of snnTorch enable small and large networks to be viably trained on CPU, where needed. Provided that the network models and tensors are loaded onto CUDA, snnTorch takes advantage of GPU acceleration in the same way as PyTorch.
Citation ^^^^^^^^^^^^^^^^^^^^^^^^ If you find snnTorch useful in your work, please cite the following source:
Jason K. Eshraghian, Max Ward, Emre Neftci, Xinxin Wang, Gregor Lenz, Girish Dwivedi, Mohammed Bennamoun, Doo Seok Jeong, and Wei D. Lu “Training Spiking Neural Networks Using Lessons From Deep Learning”. Proceedings of the IEEE, 111(9) September 2023. <https://ieeexplore.ieee.org/abstract/document/10242251>_
.. code-block:: bash
@article{eshraghian2021training, title = {Training spiking neural networks using lessons from deep learning}, author = {Eshraghian, Jason K and Ward, Max and Neftci, Emre and Wang, Xinxin and Lenz, Gregor and Dwivedi, Girish and Bennamoun, Mohammed and Jeong, Doo Seok and Lu, Wei D}, journal = {Proceedings of the IEEE}, volume = {111}, number = {9}, pages = {1016--1054}, year = {2023} }
Let us know if you are using snnTorch in any interesting work, research or blogs, as we would love to hear more about it! Reach out at snntorch@gmail.com.
Requirements ^^^^^^^^^^^^^^^^^^^^^^^^ The following packages need to be installed to use snnTorch:
They are automatically installed if snnTorch is installed using the pip command. Ensure the correct version of torch is installed for your system to enable CUDA compatibility.
Installation ^^^^^^^^^^^^^^^^^^^^^^^^
Run the following to install:
.. code-block:: bash
$ python $ pip install snntorch
To install snnTorch from source instead::
$ git clone https://github.com/jeshraghian/snnTorch $ cd snntorch $ python setup.py install
To install snntorch with conda::
$ conda install -c conda-forge snntorch
To install for an Intelligent Processing Units (IPU) based build using Graphcore's accelerators::
$ pip install snntorch-ipu
API & Examples
^^^^^^^^^^^^^^^^^^^^^^^^
A complete API is available here <https://snntorch.readthedocs.io/>__. Examples, tutorials and Colab notebooks are provided.
Quickstart ^^^^^^^^^^^^^^^^^^^^^^^^
.. image:: https://colab.research.google.com/assets/colab-badge.svg :alt: Open In Colab :target: https://colab.research.google.com/github/jeshraghian/snntorch/blob/master/examples/quickstart.ipynb
Here are a few ways you can get started with snnTorch:
Quickstart Notebook (Opens in Colab)_
The API Reference_
Examples_
Tutorials_
.. _Quickstart Notebook (Opens in Colab): https://colab.research.google.com/github/jeshraghian/snntorch/blob/master/examples/quickstart.ipynb .. _The API Reference: https://snntorch.readthedocs.io/ .. _Examples: https://snntorch.readthedocs.io/en/latest/examples.html .. _Tutorials: https://snntorch.readthedocs.io/en/latest/tutorials/index.html
For a quick example to run snnTorch, see the following snippet, or test the quickstart notebook:
.. code-block:: python
import torch, torch.nn as nn import snntorch as snn from snntorch import surrogate from snntorch import utils
num_steps = 25 # number of time steps batch_size = 1 beta = 0.5 # neuron decay rate spike_grad = surrogate.fast_sigmoid() # surrogate gradient
net = nn.Sequential( nn.Conv2d(1, 8, 5), nn.MaxPool2d(2), snn.Leaky(beta=beta, init_hidden=True, spike_grad=spike_grad), nn.Conv2d(8, 16, 5), nn.MaxPool2d(2), snn.Leaky(beta=beta, init_hidden=True, spike_grad=spike_grad), nn.Flatten(), nn.Linear(16 * 4 * 4, 10), snn.Leaky(beta=beta, init_hidden=True, spike_grad=spike_grad, output=True) )
data_in = torch.rand(num_steps, batch_size, 1, 28, 28) # random input data spike_recording = [] # record spikes over time utils.reset(net) # reset/initialize hidden states for all neurons
for step in range(num_steps): # loop over time spike, state = net(data_in[step]) # one time step of forward-pass spike_recording.append(spike) # record spikes in list
A Deep Dive into SNNs ^^^^^^^^^^^^^^^^^^^^^^^^^^^ If you wish to learn all the fundamentals of training spiking neural networks, from neuron models, to the neural code, up to backpropagation, the snnTorch tutorial series is a great place to begin. It consists of interactive notebooks with complete explanations that can get you up to speed.
.. list-table:: :widths: 20 60 30 :header-rows: 1
Tutorial 1 <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_1.html>_Tutorial 2 <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_2.html>_Tutorial 3 <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_3.html>_Tutorial 4 <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_4.html>_
2nd Order Spiking Neuron Models (Optional)
.. image:: https://colab.research.google.com/assets/colab-badge.svg :alt: Open In Colab :target: https://colab.research.google.com/github/jeshraghian/snntorch/blob/master/examples/tutorial_4_advanced_neurons.ipynb
Tutorial 5 <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_5.html>_Tutorial 6 <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_6.html>_Tutorial 7 <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_7.html>_.. list-table:: :widths: 70 40 :header-rows: 1
Population Coding <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_pop.html>_Regression: Part I - Membrane Potential Learning with LIF Neurons <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_regression_1.html>_Regression: Part II - Regression-based Classification with Recurrent LIF Neurons <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_regression_2.html>_Accelerating snnTorch on IPUs <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_ipu_1.html>_ —
Intelligent Processing Unit (IPU) Acceleration ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
snnTorch has been optimized for Graphcore's IPU accelerators <https://www.graphcore.ai/>_.
To install an IPU based build of snnTorch::
$ pip install snntorch-ipu
Low-level custom operations for IPU compatibility will be automatically compiled when :code:import snntorch is called for the first time.
When updating the Poplar SDK, these operations may need to be recompiled.
This can be done by reinstalling :code:snntorch-ipu, or deleting files in the base directory with an .so extension.
The :code:snntorch.backprop module, and several functions from :code:snntorch.functional and :code:snntorch.surrogate, are incompatible with IPUs, but can be recreated using PyTorch primitives.
Additional requirements include:
Refer to Graphcore's documentation <https://github.com/graphcore/poptorch>_ for installation instructions of poptorch and the Poplar SDK.
The homepage for the snnTorch IPU project can be found here <https://github.com/vinniesun/snntorch-ipu>.
A tutorial for training SNNs is provided here <https://snntorch.readthedocs.io/en/latest/tutorials/tutorial_ipu_1.html>.
Contributing
^^^^^^^^^^^^^^^^^^^^^^^^
If you're ready to contribute to snnTorch, instructions to do so can be found here_.
.. _found here: https://snntorch.readthedocs.io/en/latest/contributing.html
Acknowledgments
^^^^^^^^^^^^^^^^^^^^^^^^
snnTorch is currently maintained by the UCSC Neuromorphic Computing Group <https://ncg.ucsc.edu>. It was initially developed by Jason K. Eshraghian in the Lu Group (University of Michigan)_.
Additional contributions were made by Vincent Sun <https://github.com/vinniesun>, Peng Zhou <https://github.com/pengzhouzp>, Ridger Zhu <https://github.com/ridgerchu>, Alexander Henkes <https://github.com/ahenkes1>, Steven Abreu <https://github.com/stevenabreu7>, Xinxin Wang, Sreyes Venkatesh, gekkom <https://github.com/gekkom>, and Emre Neftci.
.. _Jason K. Eshraghian: https://jasoneshraghian.com .. _Lu Group (University of Michigan): https://lugroup.engin.umich.edu/
License & Copyright
^^^^^^^^^^^^^^^^^^^^^^^^
snnTorch source code is published under the terms of the MIT License.
snnTorch's documentation is licensed under a Creative Commons Attribution-Share Alike 3.0 Unported License (CC BY-SA 3.0 <https://creativecommons.org/licenses/by-sa/3.0/>_).
FAQs
Deep learning with spiking neural networks.
We found that snntorch demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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