@oncokb/oncotree

OncoTree

OncoTree is a visualisation tool for displaying the hierarchical structure of cancer types, displaying these relationships in tree format. This library comes with an OncoTree object to be used for displaying and interacting with the tree as well as utility methods to build default UI components that may be used to interact with the tree (the functionality exposed by these UI components was created completely using the public APIs exposed by the OncoTree object).

Installation

npm install oncotree
# or
yarn add oncotree

Usage

import OncoTree, { buildSearchBar, buildToolbar } from 'oncotree';

const oncoTree = new OncoTree('tree-id', 'tree-data.json');

// if using default UI components
buildSearchBar('search-bar-id', oncoTree, searchBarOptions);
buildToolbar('toolbar-id', oncoTree);

For further documentation, see oncotree.d.ts.

Development

Before you begin, make sure you have the following installed

1. NPM
2. node >=20.12.2

Since this is a library, this package simply exports functionality i.e. the code shipped in this package is not intended to be executed independently. However, index.html provides a sandbox environment to use during development. To begin, simply run the following:

npm install && npm run dev

Note: This project uses eslint to find issues. While there is a GitHub action to make sure the code passes the linting process, it is recommended to install an extension that shows these errors in your editor to view these issues before making a commit.

Buildling

1. Bump version number in package.json, and commit changes.

2. Run the following:

   npm run build && npm publish --access public
   

Testing

npm run test